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angelolab / ark-analysis

Integrated pipeline for multiplexed image analysis
https://ark-analysis.readthedocs.io/en/latest/
MIT License
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Error when starting Docker: manifest for angelolab/ark-analysis:v0.7.0 not found #1135

Closed fotisn7 closed 2 months ago

fotisn7 commented 2 months ago

Describe the bug After cloning the repository and trying to create the docker image using './docker_start.sh' I get the following error message: Unable to find image 'angelolab/ark-analysis:v0.7.0' locally docker: Error response from daemon: manifest for angelolab/ark-analysis:v0.7.0 not found: manifest unknown: manifest unknown. See 'docker run --help'.

I also tried to pull the image using Docker Desktop. When I tried running the container I got this message:

start_jupyter.sh: line 1: [: -ne: unary operator expected start_jupyter.sh: line 6: cd: /scripts: No such file or directory [C 2024-04-18 21:28:09.005 ServerApp] Bad config encountered during initialization: The 'port' trait of a ServerApp instance expected an int, not the str ''.

Does anyone know how to fix this?

Thank you

alex-l-kong commented 2 months ago

@fotisn7 starting from v0.7.0 we have suspended Docker support as it has caused known problems in the past on an individual case-by-case basis. Please use the local conda environment setup for the time being.

Looking back, containerization is far too complex a setup for an application in this state. It will be worth looking into once this repo is deployed in large-scale applications running on big cloud servers. Note that I said once, not if 😉.

fotisn7 commented 2 months ago

@alex-l-kong Thank you. I've been using the local conda environment and works great.