angelolab / ark-analysis

Integrated pipeline for multiplexed image analysis
https://ark-analysis.readthedocs.io/en/latest/
MIT License
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Mantis Directory with no segmentation files #994

Closed srivarra closed 1 year ago

srivarra commented 1 year ago

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What is the purpose of this PR?

Closes #969. Adds the ability to not move segmentation files.

How did you implement your changes

Added a flag to check and see if either seg_dir or seg_suffix_name are None. Refactored the test to use a fixture, should make it easier to modify now.

Remaining issues

N/A.