Data acquisition---pixelClustering_sigma2_passes10_rep1_mapping.csv and px_colors.csv

[fighting-boy1]

Hi! The problem I am currently encountering is that in your project named: 2022-Liu_etal_Pixie project, run: 3_pixelClustering_heatmaps.R clust_to_phenopath = paste0("pixelClustering",name,"_mapping.csv") #csv mapping each cluster to its phenotype (must be manually created) and colors_path = "px_colors.csv" #file specifying the colors for each cluster (must be manually created).

However, I wonder if you can provide examples of these two files for further study？

Best wishes!

[cliu72]

Hi @fighting-boy1, here are some example files. Please note that the "_mapping.csv" file will almost certainly be different, since there is randomness in the clustering. You will need to look at the output of the clustering and assign them their proper biological labels. The colors are also completely arbitrary - you can choose those to be whatever you want.

px_colors.csv pixelClustering_sigma2_passes10_rep1_mapping.csv