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animalnexus / feedr

R package for working with data collected from RFID feeder visits
https://animalnexus.github.io/feedr/
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Problem loading feedrUI with R4.2.3 and Rstudio 2023.03.0 #8

Closed ehofmeister closed 1 year ago

ehofmeister commented 1 year ago

Error message: Warning in install.packages : unable to access index for repository https://cran.rstudio.com/src/contrib: cannot open URL 'https://cran.rstudio.com/src/contrib/PACKAGES' Warning in install.packages : package ‘feedrUI’ is not available for this version of R

steffilazerte commented 1 year ago

Hi @ehofmeister, neither feedr nor the feedrUI are available from CRAN. If you want to install the feedrUI package you'll need to install from GitHub using the 'remotes' package:

install.packages('remotes')
remotes::install_github("animalnexus/feedrUI")

I haven't worked on feedrUI in a while so let me know if you run into any problems.

ehofmeister commented 1 year ago

Hi Steffi, I tried that and here is the R response:

install.packages('remotes') Installing package into ‘C:/Users/ehofmeister/AppData/Local/R/win-library/4.2’ (as ‘lib’ is unspecified) Warning: unable to access index for repository https://mirror.las.iastate.edu/CRAN/src/contrib: cannot open URL 'https://mirror.las.iastate.edu/CRAN/src/contrib/PACKAGES' Warning: unable to access index for repository https://mirror.las.iastate.edu/CRAN/bin/windows/contrib/4.2: cannot open URL 'https://mirror.las.iastate.edu/CRAN/bin/windows/contrib/4.2/PACKAGES' Warning message: package ‘remotes’ is not available for this version of R

A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages

remotes::install_github("animalnexus/feedrUI") e

From: Steffi LaZerte @.> Sent: Wednesday, March 22, 2023 4:19 PM To: animalnexus/feedr @.> Cc: Hofmeister, Erik K @.>; Mention @.> Subject: [EXTERNAL] Re: [animalnexus/feedr] Problem loading feedrUI with R4.2.3 and Rstudio 2023.03.0 (Issue #8)

This email has been received from outside of DOI - Use caution before clicking on links, opening attachments, or responding.

Hi @ehofmeisterhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fehofmeister&data=05%7C01%7Cehofmeister%40usgs.gov%7C516856285d154fa44b9908db2b1b2f48%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C638151167982069374%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=Bmk92D5VpgYe3oSjTkumz7fyv7aCA2wkfPRT0vaTVhs%3D&reserved=0, neither feedr nor the feedrUI are available from CRAN. If you want to install the feedrUI package you'll need to install from GitHub using the 'remotes' package:

install.packages('remotes') remotes::install_github("animalnexus/feedrUI")

I haven't worked on feedrUI in a while so let me know if you run into any problems.

— Reply to this email directly, view it on GitHubhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fanimalnexus%2Ffeedr%2Fissues%2F8%23issuecomment-1480275328&data=05%7C01%7Cehofmeister%40usgs.gov%7C516856285d154fa44b9908db2b1b2f48%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C638151167982069374%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=JZgp05inQcMU9E%2BoWDkBMsesIelJnqB7FymFZTJOau8%3D&reserved=0, or unsubscribehttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FALYAXT643IYNTNYU24ZLA5DW5NUHRANCNFSM6AAAAAAWELWA3I&data=05%7C01%7Cehofmeister%40usgs.gov%7C516856285d154fa44b9908db2b1b2f48%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C638151167982069374%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=J9r9i0fpi18Ps9MFQDYw2OshVLA7o%2BnkphXqB1tbyiE%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>

steffilazerte commented 1 year ago

Hmm, looks like you might have bigger problems 😅. Have you had success installing other packages? Looks like this is related to your specific settings. It looks like you're trying to use a local mirror (mirror.las.iastat.edu) rather than a more generic one.

I'm not 100% how to fix this, but if you're using RStudio, try going to Tools > Global Options > Packages and changing the "Primary CRAN repository" to something else.

Then try installing remotes again, and hopefully it'll work!

ehofmeister commented 1 year ago

Hi again, I am not skilled at the nuances of loading packages. I have more experience using ggplot2 to make figures. But... in Rstudio I successfully loaded remotes but then it wouldn't load feedrUL

In R GUI (I think the non Rstudio interface is called , I could load remotes but it also wouldn't load feedrUL: package ‘remotes’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\ehofmeister\AppData\Local\Temp\1\RtmpMvPKSd\downloaded_packages

remotes::install_github("animalnexus/feedrUI") Error: Failed to install 'unknown package' from GitHub: cannot open URL 'https://api.github.com/repos/animalnexus/feedrUI/contents/DESCRIPTION?ref=HEAD'

It seems I am blocked from opening api.github.com.

I am using reader cards from EIk Bridge and really need your program to extract the data.

thanks e

From: Steffi LaZerte @.> Sent: Wednesday, March 22, 2023 4:19 PM To: animalnexus/feedr @.> Cc: Hofmeister, Erik K @.>; Mention @.> Subject: [EXTERNAL] Re: [animalnexus/feedr] Problem loading feedrUI with R4.2.3 and Rstudio 2023.03.0 (Issue #8)

This email has been received from outside of DOI - Use caution before clicking on links, opening attachments, or responding.

Hi @ehofmeisterhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fehofmeister&data=05%7C01%7Cehofmeister%40usgs.gov%7C516856285d154fa44b9908db2b1b2f48%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C638151167982069374%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=Bmk92D5VpgYe3oSjTkumz7fyv7aCA2wkfPRT0vaTVhs%3D&reserved=0, neither feedr nor the feedrUI are available from CRAN. If you want to install the feedrUI package you'll need to install from GitHub using the 'remotes' package:

install.packages('remotes') remotes::install_github("animalnexus/feedrUI")

I haven't worked on feedrUI in a while so let me know if you run into any problems.

— Reply to this email directly, view it on GitHubhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fanimalnexus%2Ffeedr%2Fissues%2F8%23issuecomment-1480275328&data=05%7C01%7Cehofmeister%40usgs.gov%7C516856285d154fa44b9908db2b1b2f48%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C638151167982069374%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=JZgp05inQcMU9E%2BoWDkBMsesIelJnqB7FymFZTJOau8%3D&reserved=0, or unsubscribehttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FALYAXT643IYNTNYU24ZLA5DW5NUHRANCNFSM6AAAAAAWELWA3I&data=05%7C01%7Cehofmeister%40usgs.gov%7C516856285d154fa44b9908db2b1b2f48%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C638151167982069374%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=J9r9i0fpi18Ps9MFQDYw2OshVLA7o%2BnkphXqB1tbyiE%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>

steffilazerte commented 1 year ago

Hmm, okay, well another way to install it would be from my R-Universe:

install.packages('feedrUI', repos = c('https://steffilazerte.r-universe.dev', 'https://cloud.r-project.org'))

Also, if you're familiar with coding in R, you might find the feedr package more robust. The feedrUI package gives a GUI interface but I haven't worked on it in years so I'm not sure how it's doing. The feedr package does all the same things but via R coding (feedrUI uses feedr).

feedr can be installed the same way, just using feedr instead of feedrUI.

Good luck!

ehofmeister commented 1 year ago

Hi, I think I have it! On a whim I tried to download it on the lab computer and I think it's all there. RGui 4.0.2! Will try to work with it tomorrow. If I have questions should I just use this email? I'm interested in seeing how it processes birds that stay at the antenna for a prolonged time. I have it set to not record the same bird unless they are present for >= 5 sec. I'm using this with caged zebra finches and tox studies.

thanks Erik

From: Steffi LaZerte @.> Sent: Thursday, March 23, 2023 1:21 PM To: animalnexus/feedr @.> Cc: Hofmeister, Erik K @.>; Mention @.> Subject: [EXTERNAL] Re: [animalnexus/feedr] Problem loading feedrUI with R4.2.3 and Rstudio 2023.03.0 (Issue #8)

This email has been received from outside of DOI - Use caution before clicking on links, opening attachments, or responding.

Hmm, okay, well another way to install it would be from my R-Universe:

install.packages('feedrUI', repos = c('https://steffilazerte.r-universe.dev', 'https://cloud.r-project.org'))

Also, if you're familiar with coding in R, you might find the feedr package more robust. The feedrUI package gives a GUI interface but I haven't worked on it in years so I'm not sure how it's doing. The feedr package does all the same things but via R coding (feedrUI uses feedr).

feedr can be installed the same way, just using feedr instead of feedrUI.

Good luck!

— Reply to this email directly, view it on GitHubhttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fanimalnexus%2Ffeedr%2Fissues%2F8%23issuecomment-1481691583&data=05%7C01%7Cehofmeister%40usgs.gov%7C5ebae1ee04dd49ee0d5c08db2bcb7c94%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C638151925194023584%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=fUJpuHVBr4qhUNWvVrY1yFp%2FnCHb4PkfmxoTzh20UKs%3D&reserved=0, or unsubscribehttps://gcc02.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fnotifications%2Funsubscribe-auth%2FALYAXT7AIBQQ4ITZSFX3ZBTW5SIEFANCNFSM6AAAAAAWELWA3I&data=05%7C01%7Cehofmeister%40usgs.gov%7C5ebae1ee04dd49ee0d5c08db2bcb7c94%7C0693b5ba4b184d7b9341f32f400a5494%7C0%7C0%7C638151925194023584%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000%7C%7C%7C&sdata=94ZMPtaVHFqyCc6hwpTsLW1xSlAg3he4U9ZDI10XOpc%3D&reserved=0. You are receiving this because you were mentioned.Message ID: @.***>

steffilazerte commented 1 year ago

Great! You'll probably want to adjust the bw (between) measurement for visits, etc. Have you seen the tutorial document (https://animalnexus.github.io/feedr/)? That should help you get started (although it is a bit out of date in places I'm afraid).

For generic questions, use my email sel@steffilazerte.ca. For specific bugs you run into, posting it here on the GitHub issues isn't a bad idea (it's a public area, so others who have the same problem can see the discussion surrounding it).