First commit: Changed sv_detection.py to add chromosome column in automatic SV detection output table. So that the table is the same as when using sv_detection_and_heatmap.py.
Second commit: update sv_detection.py so that table outputs chromosomal positions
Related pull requests:
https://github.com/annaorteu/wrath/pull/5 -f window size & -c chromosome options are read in with main wrath script for sv_detection.py, then sv_detection.py and sv_detection_and_heatmap.py will have the same output SV tables
First commit: Changed sv_detection.py to add chromosome column in automatic SV detection output table. So that the table is the same as when using sv_detection_and_heatmap.py.
Second commit: update sv_detection.py so that table outputs chromosomal positions
Related pull requests:
https://github.com/annaorteu/wrath/pull/5 -f window size & -c chromosome options are read in with main wrath script for sv_detection.py, then sv_detection.py and sv_detection_and_heatmap.py will have the same output SV tables
https://github.com/annaorteu/wrath/pull/8 equivalent pull request but for script sv_detection_and_heatmap.py