annnic / cichlid-analysis

cichlid behaviour analysis
GNU General Public License v3.0
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Bug with retracking.py #26

Open maxshafer opened 3 years ago

maxshafer commented 3 years ago

Seems like there might be a bug in the retracking.py code. I get the same error message when trying this on various videos (new and old). Its not isolated to the N. marunguensis videos.

/usr/local/bin/python3.7 /Users/maxwellshafer/cichlid-analysis/cichlidanalysis/tracking/retracking.py Update background? y/n: n Track videos? y/n: y Track all videos? y/n: y Didn't find remade background, will use original background in camera folder Track with another roi? y/n: y /Volumes/BZ/Scientific Data/RG-AS04-Data01/Cichlid_sleep_videos/FISH20210505_LT_Neolon/20210505_c3_Neolamprologus-longicaudatus/roi_file.yaml {'cam_ID': '19503389', 'roi_0': (130, 195, 528, 752), 'roi_1': (656, 193, 544, 752)} /Volumes/BZ/Scientific Data/RG-AS04-Data01/Cichlid_sleep_videos/FISH20210505_LT_Neolon/20210505_c3_Neolamprologus-longicaudatus/FISH20210505_c3_r0_Neolamprologus-longicaudatus_su/roi_file.yaml couldn't find roi_file.yaml in folder: /Volumes/BZ/Scientific Data/RG-AS04-Data01/Cichlid_sleep_videos/FISH20210505_LT_Neolon/20210505_c3_Neolamprologus-longicaudatus/FISH20210505_c3_r0_Neolamprologus-longicaudatus_su called Tcl_FindHashEntry on deleted table

Process finished with exit code 134 (interrupted by signal 6: SIGABRT)

maxshafer commented 3 years ago

I found this: https://dbaontap.com/2019/11/11/python-abort-trap-6-fix-after-catalina-update/

But it seems out of date (I'm running Big Sur), and also doesn't work to fix the issue.