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anopheles-genomic-surveillance / anopheles-genomic-surveillance.github.io

Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN
https://anopheles-genomic-surveillance.github.io/
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W5M1 update #234

Closed KellyLBennett closed 2 months ago

KellyLBennett commented 2 months ago

Changes to sample_set and global changes outlined in issues #193 #199 #224 Warning below also supressed. /home/conda/developer/2835ffd46e5535e81e9672d0828c143d4f1444491ac44f0aeddd90156919e446-20240426-081151-481742-64-training-nb-maintenance-mgen-9.0.0/lib/python3.10/site-packages/malariagen_data/anoph/snp_frq.py:1203: FutureWarning: 'A' is deprecated and will be removed in a future version, please use 'Y' instead. return pd.Period(freq="A", year=year)

Resolves #216

KellyLBennett commented 2 months ago

Ready for review @ahernank @jonbrenas

KellyLBennett commented 2 months ago

Closing branch to start again due to inclusion of w5m3.