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anoushkrit / parcellation

preprocessing pipeline for handling raw neuroimaging data and conducting various file conversions
https://supwma.github.io
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setting up #18

Open anoushkrit opened 2 years ago

anoushkrit commented 2 years ago

installing dependencies required for SupWMA and other Neuroimaging toolkits

ANTs MRtrix3

anoushkrit commented 2 years ago

for installing ANTs which is required by dwimask

https://github.com/srikash/TheBeesKnees/wiki/Installing-Advanced-Normalization-Tools-%28ANTs%29

anoushkrit commented 2 years ago

another method to install ANTs in the home directory https://brianavants.wordpress.com/2012/04/13/updated-ants-compile-instructions-april-12-2012/

anoushkrit commented 2 years ago

For referring to ANTs commands and installation guide. Do refer to this handout https://github.com/stnava/ANTsTutorial/raw/master/handout/antsHandout.pdf

reolved N4BiasFieldCorrection, with the above setting up instructions