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ansariazim / treeBreaker

Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
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Syntax error after compiling treeBreaker #7

Closed maesaar closed 3 years ago

maesaar commented 4 years ago

I compiled treeBreaker but it gives me error (using with test data).

./treeBreaker -x 1000 -y 1000 -z 100 testTree.newick phenoTestFile.txt output
Syntax error.
        Usage: treeBreaker [OPTIONS] inputfile_tree inputfile_phenotype outputfile

        Options:
        -x NUM      Sets the number of iterations after burn-in (default is 500000)
        -y NUM      Sets the number of burn-in iterations (default is 500000)
        -z NUM      Sets the number of iterations between samples (default is 1000)
        -S NUM      Sets the seed for the random number generator to NUM
        -v          Verbose mode
tamelgarejo commented 3 years ago

I am having the same issue... any idea how to fix it?... thanks

ansariazim commented 3 years ago

Hi there,

Which version are you running. I would say use version 1.0 which you can dowload from here:

https://github.com/ansariazim/treeBreaker/tags

Then just follow the instruction in README document included with the v1.0.

Let me know if you still have issues.

tamelgarejo commented 3 years ago

Thank you a lot!... now it is working very nice..