antadde / N-SDM

Nested-Species Distribution Modelling
MIT License
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Errors occurring in nsdm.sh with example data #11

Open woaichixuegao opened 1 year ago

woaichixuegao commented 1 year ago

When running the example provided I encounter this error: as follows sbatch: error: resolve_ctls_from_dns_srv: res_nsearch error: Unknown host sbatch: error: fetch_config: DNS SRV lookup failed sbatch: error: _establish_config_source: failed to fetch config sbatch: fatal: Could not establish a configuration source cat: /tmp//settings/tmp/n_spe.txt: No such file or directory N-SDM settings defined and species occurence data for species disaggregated cat: /tmp//settings/tmp/spe_runs.txt: No such file or directory Starting N-SDM run 1 out of runs nsdm.sh: line 74: cd: /scripts//main/: No such file or directory N-SDM settings updated cat: /tmp//settings/tmp/n_spe.txt: No such file or directory expr: syntax error: unexpected argument ‘0’ expr: syntax error: unexpected argument ‘0’ expr: syntax error: unexpected argument ‘0’ expr: syntax error: unexpected argument ‘0’ expr: syntax error: unexpected argument ‘0’ expr: syntax error: unexpected argument ‘0’ expr: syntax error: unexpected argument ‘0’ nsdm.sh: line 170: [: =: unary operator expected nsdm.sh: line 184: cd: /scripts//main/0_mainPRE: No such file or directory sbatch: error: resolve_ctls_from_dns_srv: res_nsearch error: Unknown host sbatch: error: fetch_config: DNS SRV lookup failed sbatch: error: _establish_config_source: failed to fetch config sbatch: fatal: Could not establish a configuration source PRE modelling datasets generated nsdm.sh: line 189: cd: /scripts//main/1_mainGLO: No such file or directory sbatch: error: resolve_ctls_from_dns_srv: res_nsearch error: Unknown host sbatch: error: fetch_config: DNS SRV lookup failed sbatch: error: _establish_config_source: failed to fetch config sbatch: fatal: Could not establish a configuration source GLO data preparation and covariate selection done sbatch: error: resolve_ctls_from_dns_srv: res_nsearch error: Unknown host sbatch: error: fetch_config: DNS SRV lookup failed sbatch: error: _establish_config_source: failed to fetch config sbatch: fatal: Could not establish a configuration source GLO modelling done sbatch: error: resolve_ctls_from_dns_srv: res_nsearch error: Unknown host sbatch: error: fetch_config: DNS SRV lookup failed sbatch: error: _establish_config_source: failed to fetch config sbatch: fatal: Could not establish a configuration source GLO ensembling done nsdm.sh: line 197: [: -gt: unary operator expected nsdm.sh: line 210: [: =: unary operator expected nsdm.sh: line 227: cd: /scripts/project/main/4_mainEND: No such file or directory sbatch: error: resolve_ctls_from_dns_srv: res_nsearch error: Unknown host sbatch: error: fetch_config: DNS SRV lookup failed sbatch: error: _establish_config_source: failed to fetch config sbatch: fatal: Could not establish a configuration source Final evaluation done sacct: error: resolve_ctls_from_dns_srv: res_nsearch error: Unknown host sacct: error: fetch_config: DNS SRV lookup failed sacct: error: _establish_config_source: failed to fetch config sacct: fatal: Could not establish a configuration source Sacct outputs analysis done ODMAP protocol generated chmod: cannot access '/scripts//main': No such file or directory find: ‘d2_models/’: No such file or directory awk: fatal: cannot open file `/scripts//main/settings/settings.csv' for reading: No such file or directory Main outputs sync to saving location Finished!