Complexes that we fail to extract CDR1-3s

[mikessh]

Bad PDB record 3qib: wrong TCR annotation, #tcr=1
Bad PDB record 1lp9: wrong TCR annotation, #tcr=0
Bad PDB record 2uwe: wrong TCR annotation, #tcr=0
Bad PDB record 2j8u: wrong TCR annotation, #tcr=0
Bad PDB record 2jcc: wrong TCR annotation, #tcr=0
Bad PDB record 3vxu: no CDR3

Check if we can do it

• Manually using Igblast, protein mode, corresponding species
• Using IMGT (?) need to find a corresponding tool at the web page
• Using KABAT nomenclature (???)
• From corresponding publications

[mikessh]

PS. There are also a TCR clone names there, e.g. T36-5 for 3vxu. Perhaps we can google for them, get CDR1-3 sequences and match them to PDB chain sequences. PPS. This should go to patches, i.e. to final.annotations.patch.txt