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antigenomics / vdjdb-db

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
https://vdjdb.cdr3.net
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Summary markdown in Docker not compiling #364

Closed mikessh closed 2 months ago

mikessh commented 2 months ago

The problem is in ggplot2 and ggpubr: some plotting theme functions are not working. These functions are cosmetic only so not critical, yet there is no output HTML that can be placed to vdjdb web page. This is likely due to R version: cran40 is used and now it downloads R4.4 instead of R4.3 used to build images originally. Possible solution: downgrade to cran35 in Dockerfile to get a stable R3.6 version and remove ggpubr package.

mikessh commented 2 months ago

@LuppovDaniil perhaps consider building a docker image and storing binaries in Docker Hub, need to create a repo for antigenomics images.