antigenomics / vdjdb-db

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
https://vdjdb.cdr3.net
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vdjmatch: WARNING: An illegal reflective access operation has occurred #378

Closed llrs closed 4 months ago

llrs commented 4 months ago

Thanks for releasing this software and creating the database (I hope to contribute to it once the data I have is published).

Apologies, my question is not about submitting new data but is not about the website but about vdjmatch. I am not sure if vdjmatch is maintained anymore but I see some warnings with vdjmatch at https://github.com/antigenomics/vdjmatch. As I can't open issues there I thought I would write it through here.

Each time I run java -jar ~/bin/vdjdb/vdjmatch-1.3.1.jar I see:

WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.codehaus.groovy.vmplugin.v7.Java7$1 (file:~/bin/vdjdb/vdjmatch-1.3.1.jar) to constructor java.lang.invoke.MethodHandles$Lookup(java.lang.Class,int)
WARNING: Please consider reporting this to the maintainers of org.codehaus.groovy.vmplugin.v7.Java7$1
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release

My java version is:

$ java --version
openjdk 11.0.23 2024-04-16
OpenJDK Runtime Environment (build 11.0.23+9-post-Ubuntu-1ubuntu122.04.1)
OpenJDK 64-Bit Server VM (build 11.0.23+9-post-Ubuntu-1ubuntu122.04.1, mixed mode, sharing)
mikessh commented 4 months ago

This is a generic warning https://stackoverflow.com/questions/47935772/groovy-warning-an-illegal-reflective-access-operation-has-occurred