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antismash / antismash

antiSMASH
https://antismash.secondarymetabolites.org
GNU Affero General Public License v3.0
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less restrictive hmmer requirement in bioconda #569

Closed alexweisberg closed 1 year ago

alexweisberg commented 1 year ago

I am trying to incorporate antismash into a conda environment along with several other programs that use Hmmer3.

Currently, the environment wont solve due to a conflict between antismash, which explicitly requires 'hmmer ==3.1b2', and bakta, which requires hmmer >3.2.2.

Would it be possible to relax the restrictions on hmmer to just a version >3? Thanks!

kblin commented 1 year ago

We don't maintain the bioconda recipe of antiSMASH, the bioconda project does. Please file a bug about bioconda packages there. Having said that, I personally use hmmer in version 3.3.2 with antiSMASH at the moment with no issues. I'm not sure why there was a hard version pin in the first place.

alexweisberg commented 1 year ago

Thank you! I will contact them instead and see if they can loosen the requirement. On Mar 17, 2023 at 12:20 AM -0700, Kai Blin @.***>, wrote:

Closed #569 as completed. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: @.***>