lwade-biomech
commented
4 months ago I managed to successfully run Step 2 in Part 2, so it looks like it has all worked. Not sure why there is an error in Part 1 in that case.
Open lwade-biomech opened 4 months ago
lwade-biomech
commented
4 months ago I managed to successfully run Step 2 in Part 2, so it looks like it has all worked. Not sure why there is an error in Part 1 in that case.
Hi Antoine,
Thanks for putting this package together. Unfortunately I have had some issues with installing and running this tutorial due to the recent release of Numpy 2.0. The Pip install and requirements .txt is causing problems as instead of keeping numpy at version 1.2 for OpenSim, it is upgrading to 2.0, which is forcing everything else to then upgrade to accomodate this change. I had a few trial and error attempts but managed to get past the version errors by first installing OpenSim, then Casadi, then using conda install for most things and for those that couldnt use that, making sure I installed a version that could work with Numpy 1.2 (I did not install Numpy again as it came with OpenSim). I am now dealing with CMake version issues although it appears the Hamner_modified_scaled .dll and .cpp are being created, but the script is not running without errors? I have copied below the errors for CMake and my package list and versions below.
It should be noted that this will need to be adjusted for OpenSimAD Install instructions as well. Cheers, Logan
`runfile('C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/main.py', wdir='C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD') Traceback (most recent call last):
File ~\AppData\Local\miniconda3\envs\predsim_tutorial\lib\site-packages\spyder_kernels\py3compat.py:356 in compat_exec exec(code, globals, locals)
File c:\users\lw2175\dropbox\university\githubclones\opensimad\main.py:61 generateExternalFunction(pathOpenSimModel, pathModelFolder, pathID,
File ~\Dropbox\University\GitHubClones\opensimAD\utilities.py:562 in generateExternalFunction buildExternalFunction(outputFilename, outputDir, 3*nCoordinates)
File ~\Dropbox\University\GitHubClones\opensimAD\utilities.py:787 in buildExternalFunction shutil.rmtree(path_external_functions_filename_build)
File ~\AppData\Local\miniconda3\envs\predsim_tutorial\lib\shutil.py:759 in rmtree return _rmtree_unsafe(path, onerror)
File ~\AppData\Local\miniconda3\envs\predsim_tutorial\lib\shutil.py:624 in _rmtree_unsafe _rmtree_unsafe(fullname, onerror)
File ~\AppData\Local\miniconda3\envs\predsim_tutorial\lib\shutil.py:633 in _rmtree_unsafe onerror(os.rmdir, path, sys.exc_info())
File ~\AppData\Local\miniconda3\envs\predsim_tutorial\lib\shutil.py:631 in _rmtree_unsafe os.rmdir(path)
PermissionError: [WinError 32] The process cannot access the file because it is being used by another process: 'C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExternalFunctionHamner_modified_scaled\CMakeFiles'
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake.
Update the VERSION argument value or use a ... suffix to tell
CMake that the project does not need compatibility with older versions.
-- Building for: Visual Studio 17 2022 -- Selecting Windows SDK version 10.0.22621.0 to target Windows 10.0.19045. -- The C compiler identification is MSVC 19.40.33811.0 -- The CXX compiler identification is MSVC 19.40.33811.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: C:/Program Files/Microsoft Visual Studio/2022/Community/VC/Tools/MSVC/14.40.33807/bin/Hostx64/x64/cl.exe - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: C:/Program Files/Microsoft Visual Studio/2022/Community/VC/Tools/MSVC/14.40.33807/bin/Hostx64/x64/cl.exe - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (10.5s) -- Generating done (0.1s) -- Build files have been written to: C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/build-ExpressionGraphHamner_modified_scaled MSBuild version 17.10.4+10fbfbf2e for .NET Framework
Checking Build System Building Custom Rule C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/buildExpressionGraph/windows/CMakeLists.txt Hamner_modified_scaled.cpp C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\Component.h(2123,9): warning C4068: unknown pragma 'clang' [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\Component.h(2124,9): warning C4068: unknown pragma 'clang' [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\Component.h(2127,9): warning C4068: unknown pragma 'clang' [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\PropertyDblVec.h(145,30): warning C4477: 'sprintf' : format string '%g' requires an argument of type 'double', but variadic argument 1 has type 'T' [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\PropertyDblVec.h(145,30): warning C4477: with [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\PropertyDblVec.h(145,30): warning C4477: [ [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\PropertyDblVec.h(145,30): warning C4477: T=osim_double_adouble [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\PropertyDblVec.h(145,30): warning C4477: ] [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\include\OpenSim\Common\PropertyDblVec.h(145,17): warning C4996: 'sprintf': This function or variable may be unsafe. Consider using sprintf_s instead. To disable deprecation, use _CRT_SECURE_NO_WARNINGS. See online help for details. [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\opensimAD-install\windows\sdk\Simbody\include\SimTKcommon\internal\Exception.h(120,14): warning C4101: 'buf': unreferenced local variable [C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\Hamner_modified_scaled.vcxproj] Hamner_modified_scaled.vcxproj -> C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExpressionGraphHamner_modified_scaled\RelWithDebInfo\Hamner_modified_scaled.exe Building Custom Rule C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/buildExpressionGraph/windows/CMakeLists.txt -- Selecting Windows SDK version 10.0.22621.0 to target Windows 10.0.19045. -- Configuring done (0.1s) -- Generating done (0.1s) -- Build files have been written to: C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/build-ExternalFunctionHamner_modified_scaled MSBuild version 17.10.4+10fbfbf2e for .NET Framework
Checking Build System Building Custom Rule C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/buildExternalFunction/CMakeLists.txt foo_jac.c Hamner_modified_scaled.vcxproj -> C:\Users\lw2175\Dropbox\University\GitHubClones\opensimAD\build-ExternalFunctionHamner_modified_scaled\RelWithDebInfo\Hamner_modified_scaled.dll Building Custom Rule C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/buildExternalFunction/CMakeLists.txt -- Install configuration: "RelWithDebInfo" -- Up-to-date: C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/install-ExternalFunctionHamner_modified_scaled/lib/Hamner_modified_scaled.lib -- Installing: C:/Users/lw2175/Dropbox/University/GitHubClones/opensimAD/install-ExternalFunctionHamner_modified_scaled/bin/Hamner_modified_scaled.dll`
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