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antonisdim / haystac

Code repository for the HAYSTAC pipeline
MIT License
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Stuck in conda installation #6

Closed alvesmjoel closed 3 years ago

alvesmjoel commented 3 years ago

Conda installation unsuccessful when using the command provided in the instructions: conda install -c bioconda haystac. Returns the following then gets stuck indefinitely on "Collecting package metadata

_Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from currentrepodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): |

System: Ubuntu 14.04.5 LTS

Pkaps25 commented 3 years ago

Can you check if the command conda install -c conda-forge -c bioconda haystac works? I experienced the same issue and this fix helped.

If that doesn't work, you could also try python -m pip install git+https://github.com/antonisdim/haystac.git. This was from the file example/tutorial_example.sh

alvesmjoel commented 3 years ago

Thanks, I have tried both suggestions, but the first still gets stuck in the same step and the second prompt an installation error.

Can you check if the command conda install -c conda-forge -c bioconda haystac works? I experienced the same issue and this fix helped.

If that doesn't work, you could also try python -m pip install git+https://github.com/antonisdim/haystac.git. This was from the file example/tutorial_example.sh

antonisdim commented 3 years ago

Hello @alvesmjoel,

I hope you are doing great and apologies for the super delayed response !

We have tried to reduce the list of dependencies needed for the installation of haystac. Could you possibly follow the updated installation instructions provided on readthedocs, and try to install the latest version of haystac from github please ?

Please let us know if you face any other issues !

Best, Antony