Closed dinhe878 closed 3 years ago
Hello,
Thanks for raising this bug. This must be a bug is the recent push. I will fix this and get back to you soon. There are few more planned updates too. Will let you know. I will keep the issue open for until it is fixed.
Best regards Anuradha
@dinhe878 I have fixed the issue and a brand new version of the tool is available. Please clone the repo again and use it. Refer to the updated Readme too. I hope this update will improve results. I will update the repo again with many more improvements. :)
You might need to install SONG-vis and UMAP for this version to run. Use the following codes;
pip install umap-learn
pip install song-vis
Code to separate fastq files is available here. There will be several updates and we will include this script in the program itself in next update (soon).
So I will close this issue.
Thanks Anuradha
Hi,
Thanks for developing this great tool. I found something a bit strange that I think python-related:
I am not sure which python version has
open(f"{output}/misc/filtered_reads.fasta", "w+")
that can create a file along with non-existing folder. But al least python3.6 does not have this option. The processes worked fine after creating two folders "misc" and "images".Also, I wonder if there's an option where all the fastq-bins can be created, i.e. each bins will have a fastq file, that would be great for downstream processes.
Best, Ding