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aodn / imos-user-code-library

Code library of helper functions and examples for working with NetCDF data files typically sourced from IMOS
GNU General Public License v3.0
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Scalar variables (introduced by toolbox v2.4) are not supported #14

Open ggalibert opened 8 years ago

ggalibert commented 8 years ago

ncParse('/mnt/opendap/1/IMOS/opendap/ANMN/NRS/NRSKAI/CTD_timeseries/IMOS_ANMN-NRS_ACESTZ_20140506T051319Z_NRSKAI_FV01_NRSKAI-1405-NXIC-CTD-104.49_END-20141104T031329Z_C-20150903T024338Z.nc')

triggers the following error:

Error using warning
A message identifier must be followed by another input argument, of type char, representing the message text.

Error in ncdataset/readdata (line 464)
                    warning('NCTOOLBOX:ncdataset:readdata', ['An error occurred while reading "' variable ...

Error in ncdataset/data (line 159)
                    d = obj.readdata(variable);

Error in ncParse (line 325)
                data =  (nctoolbox_datasetInfo.data(variablesToExport(iiVar)))
sspagnol commented 8 years ago

I always thought this was something wrong with my setup. Worked around by using code idea from http://au.mathworks.com/matlabcentral/fileexchange/28556-read-netcdf/content/read_netcdf.m and changing line

d = array.copyToNDJavaArray();

to

if v.getSize == 1 d = array.copyTo1DJavaArray; else d = array.copyToNDJavaArray(); end

I don't know if the comment "% this fails if the variable has no java shape/no dimension was assigned" still applies.

Simon.

On 29 January 2016 at 14:11, Guillaume Galibert notifications@github.com wrote:

ncParse('/mnt/opendap/1/IMOS/opendap/ANMN/NRS/NRSKAI/CTD_timeseries/ IMOS_ANMN-NRS_ACESTZ_20140506T051319Z_NRSKAI_FV01_NRSKAI-1405-NXIC-CTD-104.49_END-20141104T031329Z_C-20150903T024338Z.nc ')

triggers the following error:

Error using warning A message identifier must be followed by another input argument, of type char, representing the message text.

Error in ncdataset/readdata (line 464) warning('NCTOOLBOX:ncdataset:readdata', ['An error occurred while reading "' variable ...

Error in ncdataset/data (line 159) d = obj.readdata(variable);

Error in ncParse (line 325) data = (nctoolbox_datasetInfo.data(variablesToExport(iiVar)))

— Reply to this email directly or view it on GitHub https://github.com/aodn/imos-user-code-library/issues/14.

ggalibert commented 8 years ago

@sspagnol a fix is suggested here : https://github.com/aodn/imos-user-code-library/pull/15

ggalibert commented 8 years ago

@sspagnol thanks for your input though, this is relevant for nctoolbox, not ncParse from the imos user code library. I can pass this on to nctoolbox github.