CDPH wants to use CDC's decontamination reference. CDC's decontamination reference has some problems, but tests on Terra indicate it is functional if you throw enough memory at it.
You can now specify the Docker image used by the combined decontamination task as a string. I have not added this to the standalone map_reads or remov_contam tasks because you should pretty much always use my combined task instead, if your goal is to decontaminate.
CDPH wants to use CDC's decontamination reference. CDC's decontamination reference has some problems, but tests on Terra indicate it is functional if you throw enough memory at it.
You can now specify the Docker image used by the combined decontamination task as a string. I have not added this to the standalone map_reads or remov_contam tasks because you should pretty much always use my combined task instead, if your goal is to decontaminate.