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aomlomics / tourmaline

Amplicon sequence processing workflow using QIIME 2 and Snakemake
BSD 3-Clause "New" or "Revised" License
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User-provided file path for reference database/classifier #126

Open lukenoaa opened 7 months ago

lukenoaa commented 7 months ago

Change from refseqs.qza/reftax.qza or classifier.qza to a user-provided file path (alt: Opal provides file path on server)

See how Opal handles this here: https://github.com/Geo-omics/GLAMR_omics_pipelines/blob/adc9f8ca09c68e1b7948669a5163fa40fb873551/Snakefile#L319

@ksilnoaa @CarterRoll @baydenwillms

ksilnoaa commented 2 months ago

This has been implemented in Tourmaline V2. I'll close this issue once we migrate to that version.