apache / arrow

Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics
https://arrow.apache.org/
Apache License 2.0
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[R] zstd symbol not found if there are multiple installations of zstd #24723

Closed asfimport closed 4 years ago

asfimport commented 4 years ago

I would like to install the arrow R package on my Ubuntu 19.10 system. Prebuilt binaries are unavailable, and I want to enable compression, so I set the LIBARROW_MINIMAL=false environment variable. When I do so, it looks like the package is able to compile, but can't be loaded. I'm able to install correctly if I don't set the LIBARROW_MINIMAL variable.

Here's the error I get:


** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '~/.R/3.6/00LOCK-arrow/00new/arrow/libs/arrow.so':
  ~/.R/3.6/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: ZSTD_initCStream
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘~/.R/3.6/arrow’

 

Environment: Ubuntu 19.10 R 3.6.1 Reporter: Karl Dunkle Werner / @karldw Assignee: Neal Richardson / @nealrichardson

PRs and other links:

Note: This issue was originally created as ARROW-8556. Please see the migration documentation for further details.

asfimport commented 4 years ago

Neal Richardson / @nealrichardson: Thanks for the report. Several ideas:

asfimport commented 4 years ago

Karl Dunkle Werner / @karldw: Sure! The logs are pasted below.

asfimport commented 4 years ago

Neal Richardson / @nealrichardson: Thanks. I've mapped ubuntu 19.10 to ubuntu-18.04 here so installation with a binary should Just Work now. I'm curious why zstd wasn't included correctly before (see that there is no -lzstd in the PKG_LIBS line), but if you want to let it lie and move on, that's fine with me, we can wait and see if anyone else experiences that.

asfimport commented 4 years ago

Karl Dunkle Werner / @karldw: Great!

If you want to get to the bottom of it, I would be happy to run commands you send me. I think most 19.10 users will be moving to 20.04 soon, so this might only be worth it if 20.04 experiences the same issue.

asfimport commented 4 years ago

Neal Richardson / @nealrichardson: Maybe it's something about 19.10, maybe it's something about your particular setup, or maybe it's a more general issue. To debug, I'd recommend setting ARROW_R_DEV=true (for verbosity), LIBARROW_BINARY=false (to ensure that we build from source), and LIBARROW_MINIMAL=false (so that it turns on zstd) and reinstalling. Then attach here the full installation logs, and I can try to sift through them. Then I may have some other ideas of things to try. Thanks for your help!

asfimport commented 4 years ago

Karl Dunkle Werner / @karldw:


Installing package into ‘/home/karl/test_arrow’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
trying URL 'https://cloud.r-project.org/src/contrib/arrow_0.17.0.tar.gz'
Content type 'application/x-gzip' length 242534 bytes (236 KB)
==================================================
downloaded 236 KB* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Generating code with data-raw/codegen.R
Fatal error: cannot open file 'data-raw/codegen.R': No such file or directory
trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-0.17.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) : 
  cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-0.17.0.zip'
trying URL 'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-0.17.0/apache-arrow-0.17.0.tar.gz'
Content type 'application/x-gzip' length 6460548 bytes (6.2 MB)
==================================================
downloaded 6.2 MB*** Successfully retrieved C++ source
*** Building C++ libraries
rm: cannot remove 'src/*.o': No such file or directory
*** Building with MAKEFLAGS=  -j4 
**** arrow with SOURCE_DIR=/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp BUILD_DIR=/tmp/RtmptP2CaW/file476e6fba345b DEST_DIR=libarrow/arrow-0.17.0 CMAKE=/usr/bin/cmake 
++ pwd
+ : /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow
+ : /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
+ : /tmp/RtmptP2CaW/file476e6fba345b
+ : libarrow/arrow-0.17.0
+ : /usr/bin/cmake
++ cd /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
++ pwd
+ SOURCE_DIR=/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
++ mkdir -p libarrow/arrow-0.17.0
++ cd libarrow/arrow-0.17.0
++ pwd
+ DEST_DIR=/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0
+ '[' '' = '' ']'
+ which ninja
+ CMAKE_GENERATOR=Ninja
+ '[' false = false ']'
+ ARROW_JEMALLOC=ON
+ ARROW_WITH_BROTLI=ON
+ ARROW_WITH_BZ2=ON
+ ARROW_WITH_LZ4=ON
+ ARROW_WITH_SNAPPY=ON
+ ARROW_WITH_ZLIB=ON
+ ARROW_WITH_ZSTD=ON
+ mkdir -p /tmp/RtmptP2CaW/file476e6fba345b
+ pushd /tmp/RtmptP2CaW/file476e6fba345b
/tmp/RtmptP2CaW/file476e6fba345b /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow
+ /usr/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=AUTO -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_WITH_BROTLI=ON -DARROW_WITH_BZ2=ON -DARROW_WITH_LZ4=ON -DARROW_WITH_SNAPPY=ON -DARROW_WITH_ZLIB=ON -DARROW_WITH_ZSTD=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -DOPENSSL_USE_STATIC_LIBS=ON -G Ninja /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
-- Building using CMake version: 3.13.4
-- The C compiler identification is GNU 9.2.1
-- The CXX compiler identification is GNU 9.2.1
-- Check for working C compiler: /usr/lib/ccache/cc
-- Check for working C compiler: /usr/lib/ccache/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/lib/ccache/c++
-- Check for working CXX compiler: /usr/lib/ccache/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 0.17.0 (full: '0.17.0')
-- Arrow SO version: 17 (full: 17.0.0)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") 
-- clang-tidy not found
-- clang-format not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN) 
-- infer not found
-- Found Python3: /usr/bin/python3.7 (found version "3.7.5") found components:  Interpreter 
-- Using ccache: /usr/bin/ccache
-- Found cpplint executable at /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- Using AUTO approach to find dependencies
-- ARROW_AWSSDK_BUILD_VERSION: 1.7.160
-- ARROW_BOOST_BUILD_VERSION: 1.71.0
-- ARROW_BROTLI_BUILD_VERSION: v1.0.7
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_CARES_BUILD_VERSION: 1.15.0
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.5.0
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.0
-- ARROW_GLOG_BUILD_VERSION: v0.3.5
-- ARROW_GRPC_BUILD_VERSION: v1.25.0
-- ARROW_GTEST_BUILD_VERSION: 1.8.1
-- ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
-- ARROW_LZ4_BUILD_VERSION: v1.9.2
-- ARROW_MIMALLOC_BUILD_VERSION: 270e765454f98e8bab9d42609b153425f749fff6
-- ARROW_ORC_BUILD_VERSION: 1.6.2
-- ARROW_PROTOBUF_BUILD_VERSION: v3.7.1
-- ARROW_RAPIDJSON_BUILD_VERSION: 2bbd33b33217ff4a73434ebf10cdac41e2ef5e34
-- ARROW_RE2_BUILD_VERSION: 2019-08-01
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.7
-- ARROW_THRIFT_BUILD_VERSION: 0.12.0
-- ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
-- ARROW_ZLIB_BUILD_VERSION: 1.2.11
-- ARROW_ZSTD_BUILD_VERSION: v1.4.3
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE  
-- Checking for module 'thrift'
--   No package 'thrift' found
-- Could NOT find Thrift: Found unsuitable version "", but required is at least "0.11.0" (found THRIFT_STATIC_LIB-NOTFOUND)
-- Boost version: 1.67.0
-- Found the following Boost libraries:
--   regex
--   system
--   filesystem
-- Boost include dir: /usr/include
-- Boost libraries: Boost::system;Boost::filesystem
-- Could NOT find SnappyAlt (missing: Snappy_LIB Snappy_INCLUDE_DIR) 
-- Building snappy from source
-- Checking for modules 'libbrotlicommon;libbrotlienc;libbrotlidec'
--   No package 'libbrotlicommon' found
--   No package 'libbrotlienc' found
--   No package 'libbrotlidec' found
-- Could NOT find Brotli (missing: BROTLI_COMMON_LIBRARY BROTLI_ENC_LIBRARY BROTLI_DEC_LIBRARY BROTLI_INCLUDE_DIR) 
-- Building brotli from source
-- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required.
Building Apache Thrift from source
-- Building (vendored) jemalloc from source
-- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (Required is at least version "1.1.0")
-- Building rapidjson from source
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") 
-- Checking for module 'liblz4'
--   No package 'liblz4' found
-- Could NOT find Lz4 (missing: LZ4_LIB LZ4_INCLUDE_DIR) 
-- Building lz4 from source
-- Checking for module 'libzstd'
--   Found libzstd, version 1.4.3
-- Found ZSTD: /usr/lib/x86_64-linux-gnu/libzstd.so  
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6") 
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Found hdfs.h at: /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp/thirdparty/hadoop/include/hdfs.h
-- CMAKE_C_FLAGS:  -O3 -DNDEBUG   -Wall -msse4.2
-- CMAKE_CXX_FLAGS:  -Wno-noexcept-type -Wno-subobject-linkage  -fdiagnostics-color=always -O3 -DNDEBUG  -Wall -msse4.2 
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include  
-- ---------------------------------------------------------------------
-- Arrow version:                                 0.17.0
-- 
-- Build configuration summary:
--   Generator: Ninja
--   Build type: RELEASE
--   Source directory: /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp
--   Install prefix: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0
-- 
-- Compile and link options:
-- 
--   ARROW_CXXFLAGS="" [default=""]
--       Compiler flags to append when compiling Arrow
--   ARROW_BUILD_STATIC=ON [default=ON]
--       Build static libraries
--   ARROW_BUILD_SHARED=OFF [default=ON]
--       Build shared libraries
--   ARROW_NO_DEPRECATED_API=OFF [default=OFF]
--       Exclude deprecated APIs from build
--   ARROW_USE_CCACHE=ON [default=ON]
--       Use ccache when compiling (if available)
--   ARROW_USE_LD_GOLD=OFF [default=OFF]
--       Use ld.gold for linking on Linux (if available)
--   ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
--       Use precompiled headers when compiling
--   ARROW_USE_SIMD=ON [default=ON]
--       Build with SIMD optimizations
--   ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
--       SIMD compiler optimization level
--   ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
--       Arm64 arch and extensions
--   ARROW_ALTIVEC=ON [default=ON]
--       Build with Altivec if compiler has support
--   ARROW_RPATH_ORIGIN=OFF [default=OFF]
--       Build Arrow libraries with RATH set to $ORIGIN
--   ARROW_INSTALL_NAME_RPATH=ON [default=ON]
--       Build Arrow libraries with install_name set to @rpath
--   ARROW_GGDB_DEBUG=ON [default=ON]
--       Pass -ggdb flag to debug builds
-- 
-- Test and benchmark options:
-- 
--   ARROW_BUILD_EXAMPLES=OFF [default=OFF]
--       Build the Arrow examples
--   ARROW_BUILD_TESTS=OFF [default=OFF]
--       Build the Arrow googletest unit tests
--   ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
--       Enable timing-sensitive tests
--   ARROW_BUILD_INTEGRATION=OFF [default=OFF]
--       Build the Arrow integration test executables
--   ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
--       Build the Arrow micro benchmarks
--   ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
--       Build the Arrow micro reference benchmarks
--   ARROW_TEST_LINKAGE=static [default=shared|static]
--       Linkage of Arrow libraries with unit tests executables.
--   ARROW_FUZZING=OFF [default=OFF]
--       Build Arrow Fuzzing executables
--   ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
--       Enable unit tests which use large memory
-- 
-- Lint options:
-- 
--   ARROW_ONLY_LINT=OFF [default=OFF]
--       Only define the lint and check-format targets
--   ARROW_VERBOSE_LINT=OFF [default=OFF]
--       If off, 'quiet' flags will be passed to linting tools
--   ARROW_GENERATE_COVERAGE=OFF [default=OFF]
--       Build with C++ code coverage enabled
-- 
-- Checks options:
-- 
--   ARROW_TEST_MEMCHECK=OFF [default=OFF]
--       Run the test suite using valgrind --tool=memcheck
--   ARROW_USE_ASAN=OFF [default=OFF]
--       Enable Address Sanitizer checks
--   ARROW_USE_TSAN=OFF [default=OFF]
--       Enable Thread Sanitizer checks
--   ARROW_USE_UBSAN=OFF [default=OFF]
--       Enable Undefined Behavior sanitizer checks
-- 
-- Project component options:
-- 
--   ARROW_BUILD_UTILITIES=OFF [default=OFF]
--       Build Arrow commandline utilities
--   ARROW_COMPUTE=ON [default=OFF]
--       Build the Arrow Compute Modules
--   ARROW_CSV=ON [default=OFF]
--       Build the Arrow CSV Parser Module
--   ARROW_CUDA=OFF [default=OFF]
--       Build the Arrow CUDA extensions (requires CUDA toolkit)
--   ARROW_DATASET=ON [default=OFF]
--       Build the Arrow Dataset Modules
--   ARROW_FILESYSTEM=ON [default=OFF]
--       Build the Arrow Filesystem Layer
--   ARROW_FLIGHT=OFF [default=OFF]
--       Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
--   ARROW_GANDIVA=OFF [default=OFF]
--       Build the Gandiva libraries
--   ARROW_HDFS=OFF [default=OFF]
--       Build the Arrow HDFS bridge
--   ARROW_HIVESERVER2=OFF [default=OFF]
--       Build the HiveServer2 client and Arrow adapter
--   ARROW_IPC=ON [default=ON]
--       Build the Arrow IPC extensions
--   ARROW_JEMALLOC=ON [default=ON]
--       Build the Arrow jemalloc-based allocator
--   ARROW_JNI=OFF [default=OFF]
--       Build the Arrow JNI lib
--   ARROW_JSON=ON [default=OFF]
--       Build Arrow with JSON support (requires RapidJSON)
--   ARROW_MIMALLOC=OFF [default=OFF]
--       Build the Arrow mimalloc-based allocator
--   ARROW_PARQUET=ON [default=OFF]
--       Build the Parquet libraries
--   ARROW_ORC=OFF [default=OFF]
--       Build the Arrow ORC adapter
--   ARROW_PLASMA=OFF [default=OFF]
--       Build the plasma object store along with Arrow
--   ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
--       Build the plasma object store java client
--   ARROW_PYTHON=OFF [default=OFF]
--       Build the Arrow CPython extensions
--   ARROW_S3=OFF [default=OFF]
--       Build Arrow with S3 support (requires the AWS SDK for C++)
--   ARROW_TENSORFLOW=OFF [default=OFF]
--       Build Arrow with TensorFlow support enabled
-- 
-- Thirdparty toolchain options:
-- 
--   ARROW_DEPENDENCY_SOURCE=AUTO [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
--       Method to use for acquiring arrow's build dependencies
--   ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
--       Show output from ExternalProjects rather than just logging to files
--   ARROW_BOOST_USE_SHARED=OFF [default=ON]
--       Rely on boost shared libraries where relevant
--   ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
--       Rely on Protocol Buffers shared libraries where relevant
--   ARROW_GFLAGS_USE_SHARED=ON [default=ON]
--       Rely on GFlags shared libraries where relevant
--   ARROW_WITH_BACKTRACE=ON [default=ON]
--       Build with backtrace support
--   ARROW_USE_GLOG=OFF [default=OFF]
--       Build libraries with glog support for pluggable logging
--   ARROW_WITH_BROTLI=ON [default=OFF]
--       Build with Brotli compression
--   ARROW_WITH_BZ2=ON [default=OFF]
--       Build with BZ2 compression
--   ARROW_WITH_LZ4=ON [default=OFF]
--       Build with lz4 compression
--   ARROW_WITH_SNAPPY=ON [default=OFF]
--       Build with Snappy compression
--   ARROW_WITH_ZLIB=ON [default=OFF]
--       Build with zlib compression
--   ARROW_WITH_ZSTD=ON [default=OFF]
--       Build with zstd compression
-- 
-- Parquet options:
-- 
--   PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
--       Depend only on Thirdparty headers to build libparquet.
--       Always OFF if building binaries
--   PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
--       Build the Parquet executable CLI tools. Requires static libraries to be built.
--   PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
--       Build the Parquet examples. Requires static libraries to be built.
--   PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
--       Build support for encryption. Fail if OpenSSL is not found
-- 
-- Gandiva options:
-- 
--   ARROW_GANDIVA_JAVA=OFF [default=OFF]
--       Build the Gandiva JNI wrappers
--   ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
--       Include -static-libstdc++ -static-libgcc when linking with
--       Gandiva static libraries
--   ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
--       Compiler flags to append when pre-compiling Gandiva operations
-- 
-- Advanced developer options:
-- 
--   ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
--       Compile with extra error context (line numbers, code)
--   ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
--       If enabled install ONLY targets that have already been built. Please be
--       advised that if this is enabled 'install' will fail silently on components
--       that have not been built
--   Outputting build configuration summary to /tmp/RtmptP2CaW/file476e6fba345b/cmake_summary.json
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:    OPENSSL_USE_STATIC_LIBS
-- Build files have been written to: /tmp/RtmptP2CaW/file476e6fba345b
+ /usr/bin/cmake --build . --target install
[7/241] Performing download step (download, verify and extract) for 'rapidjson_ep'
-- rapidjson_ep download command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
[10/241] Performing download step (download, verify and extract) for 'lz4_ep'
-- lz4_ep download command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-download-*.log
[14/241] Performing download step (download, verify and extract) for 'jemalloc_ep'
-- jemalloc_ep download command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
[17/241] Performing download step (download, verify and extract) for 'snappy_ep'
-- snappy_ep download command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-download-*.log
[20/241] Performing configure step for 'rapidjson_ep'
-- rapidjson_ep configure command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
[21/241] Performing build step for 'rapidjson_ep'
-- rapidjson_ep build command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
[22/241] Performing install step for 'rapidjson_ep'
-- rapidjson_ep install command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
[24/241] Performing download step (download, verify and extract) for 'thrift_ep'
-- thrift_ep download command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
[31/241] Performing download step (download, verify and extract) for 'brotli_ep'
-- brotli_ep download command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-download-*.log
[34/241] Performing configure step for 'snappy_ep'
-- snappy_ep configure command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-configure-*.log
[35/241] Performing build step for 'snappy_ep'
-- snappy_ep build command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-build-*.log
[36/241] Performing install step for 'snappy_ep'
-- snappy_ep install command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/snappy_ep-prefix/src/snappy_ep-stamp/snappy_ep-install-*.log
[38/241] Performing configure step for 'brotli_ep'
-- brotli_ep configure command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-configure-*.log
[41/241] Performing configure step for 'thrift_ep'
-- thrift_ep configure command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log
[45/241] Performing build step for 'lz4_ep'
-- lz4_ep build command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-build-*.log
[48/241] Performing build step for 'brotli_ep'
-- brotli_ep build command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-build-*.log
[49/241] Performing install step for 'brotli_ep'
-- brotli_ep install command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-install-*.log
[51/241] Performing configure step for 'jemalloc_ep'
-- jemalloc_ep configure command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
[52/241] Performing build step for 'thrift_ep'
-- thrift_ep build command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log
[53/241] Performing install step for 'thrift_ep'
-- thrift_ep install command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log
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-- jemalloc_ep build command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
[56/241] Performing install step for 'jemalloc_ep'
-- jemalloc_ep install command succeeded.  See also /tmp/RtmptP2CaW/file476e6fba345b/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
[84/241] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/scalar.cc.o
In file included from /tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp/src/arrow/scalar.cc:34:
/tmp/RtmptP2CaW/file476e274f73a4/apache-arrow-0.17.0/cpp/src/arrow/util/time.h:35:45: warning: ‘arrow::util::kTimestampConversionTable’ defined but not used [-Wunused-variable]
   35 | static std::pair<DivideOrMultiply, int64_t> kTimestampConversionTable[4][4] = {
      |                                             ^~~~~~~~~~~~~~~~~~~~~~~~~
[240/241] Install the project...
-- Install configuration: "RELEASE"
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-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/vendored/double-conversion/diy-fp.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/vendored/double-conversion/double-conversion.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/vendored/double-conversion/fast-dtoa.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/vendored/double-conversion/fixed-dtoa.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/vendored/double-conversion/ieee.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/vendored/double-conversion/strtod.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/vendored/double-conversion/utils.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/api.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/chunker.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/column_builder.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/column_decoder.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/converter.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/options.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/parser.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/reader.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/csv/test_common.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow-csv.pc
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/api.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/benchmark_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/context.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/expression.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernel.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/logical_type.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/operation.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/test_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/type_fwd.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow-compute.pc
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/add.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/aggregate.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/boolean.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/cast.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/compare.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/count.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/filter.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/hash.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/isin.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/match.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/mean.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/minmax.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/nth_to_indices.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/sort_to_indices.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/sum.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/take.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/api.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/dataset.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/discovery.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/file_base.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/file_ipc.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/file_parquet.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/filter.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/partition.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/pch.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/projector.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/scanner.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/test_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/type_fwd.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/visibility.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libarrow_dataset.a
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/FindArrowDataset.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowDatasetTargets.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowDatasetTargets-release.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowDatasetConfig.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowDatasetConfigVersion.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow-dataset.pc
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/api.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/filesystem.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/hdfs.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/localfs.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/mockfs.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/path_forest.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/path_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/s3_test_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/s3fs.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/test_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow-filesystem.pc
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/api.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/dictionary.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/feather.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/json_integration.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/json_simple.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/message.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/options.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/reader.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/test_common.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/writer.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/api.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/chunked_builder.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/chunker.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/converter.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/options.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/parser.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/rapidjson_defs.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/reader.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/arrow/json/test_common.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow-json.pc
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libparquet.a
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/FindParquet.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ParquetTargets.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ParquetTargets-release.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ParquetConfig.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ParquetConfigVersion.cmake
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/parquet.pc
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/bloom_filter.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/column_page.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/column_reader.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/column_scanner.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/column_writer.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/deprecated_io.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/encoding.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/encryption.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/exception.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/file_reader.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/file_writer.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/hasher.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/metadata.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/murmur3.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/pch.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/platform.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/printer.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/properties.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/schema.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/statistics.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/stream_reader.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/stream_writer.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/test_encryption_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/test_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/types.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/windows_compatibility.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/parquet_version.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/api/io.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/api/reader.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/api/schema.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/api/writer.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/reader.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/schema.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/test_util.h
-- Installing: /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/writer.h
+ '[' 0 -ne 0 ']'
+ find . -regex '.*/.*/lib/.*\.a$'
+ xargs '-I{}' cp -u '{}' /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib
+ rm /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libjemalloc.a
+ '[' -f /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libbrotlicommon-static.a ']'
+ mv /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libbrotlicommon-static.a /tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib/libbrotlizzz-static.a
+ popd
/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow
PKG_CFLAGS=-I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW
PKG_LIBS=-L/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib -larrow_dataset -lparquet -larrow -larrow -larrow_dataset -lbrotlidec-static -lbrotlienc-static -lbrotlizzz-static -ljemalloc_pic -llz4 -lparquet -lsnappy -lthrift -lthriftz
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c array.cpp -o array.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c array_from_vector.cpp -o array_from_vector.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c array_to_vector.cpp -o array_to_vector.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c arraydata.cpp -o arraydata.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c arrowExports.cpp -o arrowExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c buffer.cpp -o buffer.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c chunkedarray.cpp -o chunkedarray.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c compression.cpp -o compression.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c compute.cpp -o compute.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c csv.cpp -o csv.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c dataset.cpp -o dataset.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c datatype.cpp -o datatype.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c expression.cpp -o expression.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c feather.cpp -o feather.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c field.cpp -o field.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c filesystem.cpp -o filesystem.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c io.cpp -o io.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c json.cpp -o json.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c memorypool.cpp -o memorypool.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c message.cpp -o message.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c parquet.cpp -o parquet.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c py-to-r.cpp -o py-to-r.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c recordbatch.cpp -o recordbatch.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c recordbatchreader.cpp -o recordbatchreader.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c schema.cpp -o schema.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c symbols.cpp -o symbols.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c table.cpp -o table.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c threadpool.cpp -o threadpool.o
g++ -std=gnu++11 -Wl,--strip-debug -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/tmp/RtmpynJFHV/R.INSTALL474739c260b7/arrow/libarrow/arrow-0.17.0/lib -larrow_dataset -lparquet -larrow -larrow -larrow_dataset -lbrotlidec-static -lbrotlienc-static -lbrotlizzz-static -ljemalloc_pic -llz4 -lparquet -lsnappy -lthrift -lthriftz -L/usr/lib/R/lib -lR
installing to /home/karl/test_arrow/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/home/karl/test_arrow/00LOCK-arrow/00new/arrow/libs/arrow.so':
  /home/karl/test_arrow/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: ZSTD_initCStream
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/karl/test_arrow/arrow’The downloaded source packages are in
    ‘/tmp/RtmprbZTya/downloaded_packages’
Warning message:
In install.packages("arrow") :
  installation of package ‘arrow’ had non-zero exit status
asfimport commented 4 years ago

Neal Richardson / @nealrichardson: Thanks, that's helpful. So what I see is that when the C++ library builds, cmake finds the system zstd so it opts to use that instead of build it from source too. But then when the R package shared library tries to load, it can't find it.

This is beyond my level of C++ competence to debug further, so I'll solicit help from someone else.

asfimport commented 4 years ago

Neal Richardson / @nealrichardson: Any ideas @fsaintjacques @bkietz?

asfimport commented 4 years ago

Karl Dunkle Werner / @karldw: Update: I remembered dev packages.

I had libzstd-dev 1.4.3 installed as a dependency of libgdal-dev. After uninstalling it, I was able to install arrow. Logs are below.

 

 


* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Generating code with data-raw/codegen.R
Fatal error: cannot open file 'data-raw/codegen.R': No such file or directory
trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-0.17.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) : 
  cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-0.17.0.zip'
trying URL 'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-0.17.0/apache-arrow-0.17.0.tar.gz'
Content type 'application/x-gzip' length 6460548 bytes (6.2 MB)
==================================================
downloaded 6.2 MB*** Successfully retrieved C++ source
*** Building C++ libraries
rm: cannot remove 'src/*.o': No such file or directory
*** Building with MAKEFLAGS=  -j4 
**** arrow with SOURCE_DIR=/tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp BUILD_DIR=/tmp/Rtmp9loTsA/file46055b57ae53 DEST_DIR=libarrow/arrow-0.17.0 CMAKE=/usr/bin/cmake 
++ pwd
+ : /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow
+ : /tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp
+ : /tmp/Rtmp9loTsA/file46055b57ae53
+ : libarrow/arrow-0.17.0
+ : /usr/bin/cmake
++ cd /tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp
++ pwd
+ SOURCE_DIR=/tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp
++ mkdir -p libarrow/arrow-0.17.0
++ cd libarrow/arrow-0.17.0
++ pwd
+ DEST_DIR=/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0
+ '[' '' = '' ']'
+ which ninja
+ CMAKE_GENERATOR=Ninja
+ '[' false = false ']'
+ ARROW_JEMALLOC=ON
+ ARROW_WITH_BROTLI=ON
+ ARROW_WITH_BZ2=ON
+ ARROW_WITH_LZ4=ON
+ ARROW_WITH_SNAPPY=ON
+ ARROW_WITH_ZLIB=ON
+ ARROW_WITH_ZSTD=ON
+ mkdir -p /tmp/Rtmp9loTsA/file46055b57ae53
+ pushd /tmp/Rtmp9loTsA/file46055b57ae53
/tmp/Rtmp9loTsA/file46055b57ae53 /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow
+ /usr/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=AUTO -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_WITH_BROTLI=ON -DARROW_WITH_BZ2=ON -DARROW_WITH_LZ4=ON -DARROW_WITH_SNAPPY=ON -DARROW_WITH_ZLIB=ON -DARROW_WITH_ZSTD=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -DOPENSSL_USE_STATIC_LIBS=ON -G Ninja /tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp
-- Building using CMake version: 3.13.4
-- The C compiler identification is GNU 9.2.1
-- The CXX compiler identification is GNU 9.2.1
-- Check for working C compiler: /usr/lib/ccache/cc
-- Check for working C compiler: /usr/lib/ccache/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/lib/ccache/c++
-- Check for working CXX compiler: /usr/lib/ccache/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 0.17.0 (full: '0.17.0')
-- Arrow SO version: 17 (full: 17.0.0)
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") 
-- clang-tidy not found
-- clang-format not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN) 
-- infer not found
-- Found Python3: /usr/bin/python3.7 (found version "3.7.5") found components:  Interpreter 
-- Using ccache: /usr/bin/ccache
-- Found cpplint executable at /tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- Using AUTO approach to find dependencies
-- ARROW_AWSSDK_BUILD_VERSION: 1.7.160
-- ARROW_BOOST_BUILD_VERSION: 1.71.0
-- ARROW_BROTLI_BUILD_VERSION: v1.0.7
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_CARES_BUILD_VERSION: 1.15.0
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.5.0
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.0
-- ARROW_GLOG_BUILD_VERSION: v0.3.5
-- ARROW_GRPC_BUILD_VERSION: v1.25.0
-- ARROW_GTEST_BUILD_VERSION: 1.8.1
-- ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
-- ARROW_LZ4_BUILD_VERSION: v1.9.2
-- ARROW_MIMALLOC_BUILD_VERSION: 270e765454f98e8bab9d42609b153425f749fff6
-- ARROW_ORC_BUILD_VERSION: 1.6.2
-- ARROW_PROTOBUF_BUILD_VERSION: v3.7.1
-- ARROW_RAPIDJSON_BUILD_VERSION: 2bbd33b33217ff4a73434ebf10cdac41e2ef5e34
-- ARROW_RE2_BUILD_VERSION: 2019-08-01
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.7
-- ARROW_THRIFT_BUILD_VERSION: 0.12.0
-- ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
-- ARROW_ZLIB_BUILD_VERSION: 1.2.11
-- ARROW_ZSTD_BUILD_VERSION: v1.4.3
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE  
-- Checking for module 'thrift'
--   No package 'thrift' found
-- Could NOT find Thrift: Found unsuitable version "", but required is at least "0.11.0" (found THRIFT_STATIC_LIB-NOTFOUND)
-- Boost version: 1.67.0
-- Found the following Boost libraries:
--   regex
--   system
--   filesystem
-- Boost include dir: /usr/include
-- Boost libraries: Boost::system;Boost::filesystem
-- Could NOT find SnappyAlt (missing: Snappy_LIB Snappy_INCLUDE_DIR) 
-- Building snappy from source
-- Checking for modules 'libbrotlicommon;libbrotlienc;libbrotlidec'
--   No package 'libbrotlicommon' found
--   No package 'libbrotlienc' found
--   No package 'libbrotlidec' found
-- Could NOT find Brotli (missing: BROTLI_COMMON_LIBRARY BROTLI_ENC_LIBRARY BROTLI_DEC_LIBRARY BROTLI_INCLUDE_DIR) 
-- Building brotli from source
-- Building without OpenSSL support. Minimum OpenSSL version 1.0.2 required.
Building Apache Thrift from source
-- Building (vendored) jemalloc from source
-- Could NOT find RapidJSONAlt (missing: RAPIDJSON_INCLUDE_DIR) (Required is at least version "1.1.0")
-- Building rapidjson from source
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") 
-- Checking for module 'liblz4'
--   No package 'liblz4' found
-- Could NOT find Lz4 (missing: LZ4_LIB LZ4_INCLUDE_DIR) 
-- Building lz4 from source
-- Checking for module 'libzstd'
--   No package 'libzstd' found
-- Could NOT find ZSTD (missing: ZSTD_LIB ZSTD_INCLUDE_DIR) 
-- Building zstd from source
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6") 
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Found hdfs.h at: /tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp/thirdparty/hadoop/include/hdfs.h
-- CMAKE_C_FLAGS:  -O3 -DNDEBUG   -Wall -msse4.2
-- CMAKE_CXX_FLAGS:  -Wno-noexcept-type -Wno-subobject-linkage  -fdiagnostics-color=always -O3 -DNDEBUG  -Wall -msse4.2 
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include  
-- ---------------------------------------------------------------------
-- Arrow version:                                 0.17.0
-- 
-- Build configuration summary:
--   Generator: Ninja
--   Build type: RELEASE
--   Source directory: /tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp
--   Install prefix: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0
-- 
-- Compile and link options:
-- 
--   ARROW_CXXFLAGS="" [default=""]
--       Compiler flags to append when compiling Arrow
--   ARROW_BUILD_STATIC=ON [default=ON]
--       Build static libraries
--   ARROW_BUILD_SHARED=OFF [default=ON]
--       Build shared libraries
--   ARROW_NO_DEPRECATED_API=OFF [default=OFF]
--       Exclude deprecated APIs from build
--   ARROW_USE_CCACHE=ON [default=ON]
--       Use ccache when compiling (if available)
--   ARROW_USE_LD_GOLD=OFF [default=OFF]
--       Use ld.gold for linking on Linux (if available)
--   ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
--       Use precompiled headers when compiling
--   ARROW_USE_SIMD=ON [default=ON]
--       Build with SIMD optimizations
--   ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
--       SIMD compiler optimization level
--   ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
--       Arm64 arch and extensions
--   ARROW_ALTIVEC=ON [default=ON]
--       Build with Altivec if compiler has support
--   ARROW_RPATH_ORIGIN=OFF [default=OFF]
--       Build Arrow libraries with RATH set to $ORIGIN
--   ARROW_INSTALL_NAME_RPATH=ON [default=ON]
--       Build Arrow libraries with install_name set to @rpath
--   ARROW_GGDB_DEBUG=ON [default=ON]
--       Pass -ggdb flag to debug builds
-- 
-- Test and benchmark options:
-- 
--   ARROW_BUILD_EXAMPLES=OFF [default=OFF]
--       Build the Arrow examples
--   ARROW_BUILD_TESTS=OFF [default=OFF]
--       Build the Arrow googletest unit tests
--   ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
--       Enable timing-sensitive tests
--   ARROW_BUILD_INTEGRATION=OFF [default=OFF]
--       Build the Arrow integration test executables
--   ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
--       Build the Arrow micro benchmarks
--   ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
--       Build the Arrow micro reference benchmarks
--   ARROW_TEST_LINKAGE=static [default=shared|static]
--       Linkage of Arrow libraries with unit tests executables.
--   ARROW_FUZZING=OFF [default=OFF]
--       Build Arrow Fuzzing executables
--   ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
--       Enable unit tests which use large memory
-- 
-- Lint options:
-- 
--   ARROW_ONLY_LINT=OFF [default=OFF]
--       Only define the lint and check-format targets
--   ARROW_VERBOSE_LINT=OFF [default=OFF]
--       If off, 'quiet' flags will be passed to linting tools
--   ARROW_GENERATE_COVERAGE=OFF [default=OFF]
--       Build with C++ code coverage enabled
-- 
-- Checks options:
-- 
--   ARROW_TEST_MEMCHECK=OFF [default=OFF]
--       Run the test suite using valgrind --tool=memcheck
--   ARROW_USE_ASAN=OFF [default=OFF]
--       Enable Address Sanitizer checks
--   ARROW_USE_TSAN=OFF [default=OFF]
--       Enable Thread Sanitizer checks
--   ARROW_USE_UBSAN=OFF [default=OFF]
--       Enable Undefined Behavior sanitizer checks
-- 
-- Project component options:
-- 
--   ARROW_BUILD_UTILITIES=OFF [default=OFF]
--       Build Arrow commandline utilities
--   ARROW_COMPUTE=ON [default=OFF]
--       Build the Arrow Compute Modules
--   ARROW_CSV=ON [default=OFF]
--       Build the Arrow CSV Parser Module
--   ARROW_CUDA=OFF [default=OFF]
--       Build the Arrow CUDA extensions (requires CUDA toolkit)
--   ARROW_DATASET=ON [default=OFF]
--       Build the Arrow Dataset Modules
--   ARROW_FILESYSTEM=ON [default=OFF]
--       Build the Arrow Filesystem Layer
--   ARROW_FLIGHT=OFF [default=OFF]
--       Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
--   ARROW_GANDIVA=OFF [default=OFF]
--       Build the Gandiva libraries
--   ARROW_HDFS=OFF [default=OFF]
--       Build the Arrow HDFS bridge
--   ARROW_HIVESERVER2=OFF [default=OFF]
--       Build the HiveServer2 client and Arrow adapter
--   ARROW_IPC=ON [default=ON]
--       Build the Arrow IPC extensions
--   ARROW_JEMALLOC=ON [default=ON]
--       Build the Arrow jemalloc-based allocator
--   ARROW_JNI=OFF [default=OFF]
--       Build the Arrow JNI lib
--   ARROW_JSON=ON [default=OFF]
--       Build Arrow with JSON support (requires RapidJSON)
--   ARROW_MIMALLOC=OFF [default=OFF]
--       Build the Arrow mimalloc-based allocator
--   ARROW_PARQUET=ON [default=OFF]
--       Build the Parquet libraries
--   ARROW_ORC=OFF [default=OFF]
--       Build the Arrow ORC adapter
--   ARROW_PLASMA=OFF [default=OFF]
--       Build the plasma object store along with Arrow
--   ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
--       Build the plasma object store java client
--   ARROW_PYTHON=OFF [default=OFF]
--       Build the Arrow CPython extensions
--   ARROW_S3=OFF [default=OFF]
--       Build Arrow with S3 support (requires the AWS SDK for C++)
--   ARROW_TENSORFLOW=OFF [default=OFF]
--       Build Arrow with TensorFlow support enabled
-- 
-- Thirdparty toolchain options:
-- 
--   ARROW_DEPENDENCY_SOURCE=AUTO [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
--       Method to use for acquiring arrow's build dependencies
--   ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
--       Show output from ExternalProjects rather than just logging to files
--   ARROW_BOOST_USE_SHARED=OFF [default=ON]
--       Rely on boost shared libraries where relevant
--   ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
--       Rely on Protocol Buffers shared libraries where relevant
--   ARROW_GFLAGS_USE_SHARED=ON [default=ON]
--       Rely on GFlags shared libraries where relevant
--   ARROW_WITH_BACKTRACE=ON [default=ON]
--       Build with backtrace support
--   ARROW_USE_GLOG=OFF [default=OFF]
--       Build libraries with glog support for pluggable logging
--   ARROW_WITH_BROTLI=ON [default=OFF]
--       Build with Brotli compression
--   ARROW_WITH_BZ2=ON [default=OFF]
--       Build with BZ2 compression
--   ARROW_WITH_LZ4=ON [default=OFF]
--       Build with lz4 compression
--   ARROW_WITH_SNAPPY=ON [default=OFF]
--       Build with Snappy compression
--   ARROW_WITH_ZLIB=ON [default=OFF]
--       Build with zlib compression
--   ARROW_WITH_ZSTD=ON [default=OFF]
--       Build with zstd compression
-- 
-- Parquet options:
-- 
--   PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
--       Depend only on Thirdparty headers to build libparquet.
--       Always OFF if building binaries
--   PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
--       Build the Parquet executable CLI tools. Requires static libraries to be built.
--   PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
--       Build the Parquet examples. Requires static libraries to be built.
--   PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
--       Build support for encryption. Fail if OpenSSL is not found
-- 
-- Gandiva options:
-- 
--   ARROW_GANDIVA_JAVA=OFF [default=OFF]
--       Build the Gandiva JNI wrappers
--   ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
--       Include -static-libstdc++ -static-libgcc when linking with
--       Gandiva static libraries
--   ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
--       Compiler flags to append when pre-compiling Gandiva operations
-- 
-- Advanced developer options:
-- 
--   ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
--       Compile with extra error context (line numbers, code)
--   ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
--       If enabled install ONLY targets that have already been built. Please be
--       advised that if this is enabled 'install' will fail silently on components
--       that have not been built
--   Outputting build configuration summary to /tmp/Rtmp9loTsA/file46055b57ae53/cmake_summary.json
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:    OPENSSL_USE_STATIC_LIBS
-- Build files have been written to: /tmp/Rtmp9loTsA/file46055b57ae53
+ /usr/bin/cmake --build . --target install
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-- lz4_ep download command succeeded.  See also /tmp/Rtmp9loTsA/file46055b57ae53/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-download-*.log
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-- brotli_ep download command succeeded.  See also /tmp/Rtmp9loTsA/file46055b57ae53/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-download-*.log
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-- brotli_ep configure command succeeded.  See also /tmp/Rtmp9loTsA/file46055b57ae53/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-configure-*.log
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-- lz4_ep build command succeeded.  See also /tmp/Rtmp9loTsA/file46055b57ae53/lz4_ep-prefix/src/lz4_ep-stamp/lz4_ep-build-*.log
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-- brotli_ep build command succeeded.  See also /tmp/Rtmp9loTsA/file46055b57ae53/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-build-*.log
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-- brotli_ep install command succeeded.  See also /tmp/Rtmp9loTsA/file46055b57ae53/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-install-*.log
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[93/249] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/scalar.cc.o
In file included from /tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp/src/arrow/scalar.cc:34:
/tmp/Rtmp9loTsA/file46054fc6ee7f/apache-arrow-0.17.0/cpp/src/arrow/util/time.h:35:45: warning: ‘arrow::util::kTimestampConversionTable’ defined but not used [-Wunused-variable]
   35 | static std::pair<DivideOrMultiply, int64_t> kTimestampConversionTable[4][4] = {
      |                                             ^~~~~~~~~~~~~~~~~~~~~~~~~
[248/249] Install the project...
-- Install configuration: "RELEASE"
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/util/config.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/share/doc/arrow/LICENSE.txt
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/share/doc/arrow/NOTICE.txt
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/share/doc/arrow/README.md
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/libarrow.a
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/FindArrow.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowTargets.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowTargets-release.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowConfig.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowConfigVersion.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow.pc
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/api.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/array.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/buffer.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/buffer_builder.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/builder.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/compare.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/device.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/extension_type.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/memory_pool.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/memory_pool_test.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/pch.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/pretty_print.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/record_batch.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/result.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/scalar.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/sparse_tensor.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/status.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/stl.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/stl_allocator.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/table.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/table_builder.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/tensor.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/type.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/type_fwd.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/type_traits.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/visitor.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/visitor_inline.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowOptions.cmake
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-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/sort_to_indices.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/sum.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/compute/kernels/take.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/api.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/dataset.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/discovery.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/file_base.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/file_ipc.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/file_parquet.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/filter.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/partition.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/pch.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/projector.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/scanner.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/test_util.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/type_fwd.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/dataset/visibility.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/libarrow_dataset.a
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/FindArrowDataset.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowDatasetTargets.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowDatasetTargets-release.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowDatasetConfig.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ArrowDatasetConfigVersion.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow-dataset.pc
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/api.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/filesystem.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/hdfs.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/localfs.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/mockfs.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/path_forest.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/path_util.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/s3_test_util.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/s3fs.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/filesystem/test_util.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow-filesystem.pc
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/api.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/dictionary.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/feather.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/json_integration.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/json_simple.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/message.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/options.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/reader.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/test_common.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/util.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/ipc/writer.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/api.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/chunked_builder.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/chunker.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/converter.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/options.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/parser.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/rapidjson_defs.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/reader.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/arrow/json/test_common.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/arrow-json.pc
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/libparquet.a
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/FindParquet.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ParquetTargets.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ParquetTargets-release.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ParquetConfig.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/cmake/arrow/ParquetConfigVersion.cmake
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/pkgconfig/parquet.pc
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/bloom_filter.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/column_page.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/column_reader.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/column_scanner.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/column_writer.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/deprecated_io.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/encoding.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/encryption.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/exception.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/file_reader.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/file_writer.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/hasher.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/metadata.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/murmur3.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/pch.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/platform.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/printer.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/properties.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/schema.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/statistics.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/stream_reader.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/stream_writer.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/test_encryption_util.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/test_util.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/types.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/windows_compatibility.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/parquet_version.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/api/io.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/api/reader.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/api/schema.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/api/writer.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/reader.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/schema.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/test_util.h
-- Installing: /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include/parquet/arrow/writer.h
+ '[' 0 -ne 0 ']'
+ find . -regex '.*/.*/lib/.*\.a$'
+ xargs '-I{}' cp -u '{}' /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib
+ rm /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/libjemalloc.a
+ '[' -f /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/libbrotlicommon-static.a ']'
+ mv /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/libbrotlicommon-static.a /tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib/libbrotlizzz-static.a
+ popd
/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow
PKG_CFLAGS=-I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW
PKG_LIBS=-L/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib -larrow_dataset -lparquet -larrow -larrow -larrow_dataset -lbrotlidec-static -lbrotlienc-static -lbrotlizzz-static -ljemalloc_pic -llz4 -lparquet -lsnappy -lthrift -lthriftz -lzstd
** libs
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c array.cpp -o array.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c array_from_vector.cpp -o array_from_vector.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c array_to_vector.cpp -o array_to_vector.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c arraydata.cpp -o arraydata.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c arrowExports.cpp -o arrowExports.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c buffer.cpp -o buffer.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c chunkedarray.cpp -o chunkedarray.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c compression.cpp -o compression.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c compute.cpp -o compute.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c csv.cpp -o csv.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c dataset.cpp -o dataset.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c datatype.cpp -o datatype.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c expression.cpp -o expression.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c feather.cpp -o feather.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c field.cpp -o field.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c filesystem.cpp -o filesystem.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c io.cpp -o io.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c json.cpp -o json.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c memorypool.cpp -o memorypool.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c message.cpp -o message.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c parquet.cpp -o parquet.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c py-to-r.cpp -o py-to-r.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c recordbatch.cpp -o recordbatch.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c recordbatchreader.cpp -o recordbatchreader.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c schema.cpp -o schema.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c symbols.cpp -o symbols.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c table.cpp -o table.o
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/include  -DARROW_R_WITH_ARROW -I"/home/karl/test_arrow/Rcpp/include"   -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c threadpool.cpp -o threadpool.o
g++ -std=gnu++11 -Wl,--strip-debug -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o schema.o symbols.o table.o threadpool.o -L/tmp/Rtmppd6Y9y/R.INSTALL45dd4a4e6ea2/arrow/libarrow/arrow-0.17.0/lib -larrow_dataset -lparquet -larrow -larrow -larrow_dataset -lbrotlidec-static -lbrotlienc-static -lbrotlizzz-static -ljemalloc_pic -llz4 -lparquet -lsnappy -lthrift -lthriftz -lzstd -L/usr/lib/R/lib -lR
installing to /home/karl/test_arrow/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)

 

 

asfimport commented 4 years ago

Neal Richardson / @nealrichardson: Thanks, that makes some sense. Googling the original undefined symbol error message, all I found were issues caused by having multiple versions of zstd installed (e.g. https://github.com/facebook/wangle/issues/73), but since you said you didn't have it installed before, I didn't think it was relevant.

I wish there were a good way to make it not fail in that case, to make sure that if you build from source in the R build, that that version gets picked up. Maybe someone else will have an idea on how to achieve that.

asfimport commented 4 years ago

Karl Dunkle Werner / @karldw: Update: LIBARROW_BINARY=ubuntu-18.04 seems to work with Ubuntu 20.04 too. (It compiles; I haven't run the tests.)

asfimport commented 4 years ago

Neal Richardson / @nealrichardson: Issue resolved by pull request 7196 https://github.com/apache/arrow/pull/7196