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apache / arrow

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing
https://arrow.apache.org/
Apache License 2.0
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Could't use the read_parquet() fucntion call #27995

Closed asfimport closed 3 years ago

asfimport commented 3 years ago 

Error in io___MemoryMappedFile__Open(path, mode) : 
 Cannot call io___MemoryMappedFile__Open(). See https://arrow.apache.org/docs/r/articles/install.html for help installing Arrow C++ libraries.

> arrow::install_arrow(verbose = TRUE)
Installing package into ‘/geode2/home/u070/rrokde/Carbonate/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
trying URL 'https://cran.rstudio.com/src/contrib/arrow_3.0.0.tar.gz'
Content type 'application/x-gzip' length 344814 bytes (336 KB)
==================================================
downloaded 336 KB

* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/redhatenterpriseserver-7/arrow-3.0.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) : 
 cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/bin/redhatenterpriseserver-7/arrow-3.0.0.zip'
*** No C++ binaries found for redhatenterpriseserver-7
trying URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
Error in download.file(from_url, to_file, quiet = quietly) : 
 cannot open URL 'https://dl.bintray.com/ursalabs/arrow-r/libarrow/src/arrow-3.0.0.zip'
trying URL 'https://www.apache.org/dyn/closer.lua?action=download&filename=arrow/arrow-3.0.0/apache-arrow-3.0.0.tar.gz'
Content type 'application/octet-stream' length 8200790 bytes (7.8 MB)
==================================================
downloaded 7.8 MB

*** Successfully retrieved C++ source
*** Building C++ libraries
*** Building with MAKEFLAGS= -j2 
**** cmake
trying URL 'https://github.com/Kitware/CMake/releases/download/v3.19.2/cmake-3.19.2-Linux-x86_64.tar.gz'
Content type 'application/octet-stream' length 42931014 bytes (40.9 MB)
==================================================
downloaded 40.9 MB

**** arrow with SOURCE_DIR="/tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp" BUILD_DIR="/tmp/RtmpcOhh4x/file86c71a6ed76f" DEST_DIR="libarrow/arrow-3.0.0" CMAKE="/tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake" CC="icc" CXX="icpc -std=gnu++11" LDFLAGS="-L//N/soft/rhel7/zlib/gnu/1.2.11/lib -L/N/soft/rhel7/bzip2/1.0.6/lib -L/N/soft/rhel7/xz/5.2.4/lib -L/N/soft/rhel7/pcre/8.40/lib -L/N/soft/rhel7/cairo/1.15.4/lib -lcairo" ARROW_S3=ON ARROW_MIMALLOC=ON 
++ pwd
+ : /tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow
+ : /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
+ : /tmp/RtmpcOhh4x/file86c71a6ed76f
+ : libarrow/arrow-3.0.0
+ : /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake
++ cd /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
++ pwd
+ SOURCE_DIR=/tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
++ mkdir -p libarrow/arrow-3.0.0
++ cd libarrow/arrow-3.0.0
++ pwd
+ DEST_DIR=/tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow/libarrow/arrow-3.0.0
+ '[' '' = '' ']'
+ which ninja
+ CMAKE_GENERATOR=Ninja
+ '[' FALSE = false ']'
+ ARROW_DEFAULT_PARAM=OFF
+ mkdir -p /tmp/RtmpcOhh4x/file86c71a6ed76f
+ pushd /tmp/RtmpcOhh4x/file86c71a6ed76f
/tmp/RtmpcOhh4x/file86c71a6ed76f /tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow
+ /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=BUNDLED -DARROW_FILESYSTEM=ON -DARROW_JEMALLOC=ON -DARROW_MIMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=ON -DARROW_WITH_BROTLI=OFF -DARROW_WITH_BZ2=OFF -DARROW_WITH_LZ4=OFF -DARROW_WITH_SNAPPY=OFF -DARROW_WITH_UTF8PROC=OFF -DARROW_WITH_ZLIB=OFF -DARROW_WITH_ZSTD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow/libarrow/arrow-3.0.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=ON -G Ninja /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
-- Building using CMake version: 3.19.2
-- The C compiler identification is Intel 19.0.5.20190815
-- The CXX compiler identification is Intel 19.0.5.20190815
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 3.0.0 (full: '3.0.0')
-- Arrow SO version: 300 (full: 300.0.0)
-- clang-tidy not found
-- clang-format not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN) 
-- infer not found
-- Found Python3: /N/soft/rhel7/python/3.8.2/bin/python3.8 (found version "3.8.2") found components: Interpreter 
-- Found cpplint executable at /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE=\{release,debug,...})
-- Build Type: RELEASE
-- Using BUNDLED approach to find dependencies
-- ARROW_ABSL_BUILD_VERSION: 0f3bb466b868b523cf1dc9b2aaaed65c77b28862
-- ARROW_AWSSDK_BUILD_VERSION: 1.8.90
-- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.5
-- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.4.59
-- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
-- ARROW_BOOST_BUILD_VERSION: 1.71.0
-- ARROW_BROTLI_BUILD_VERSION: v1.0.7
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_CARES_BUILD_VERSION: 1.16.1
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.5.2
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.2
-- ARROW_GLOG_BUILD_VERSION: v0.4.0
-- ARROW_GRPC_BUILD_VERSION: v1.33.2
-- ARROW_GTEST_BUILD_VERSION: 1.10.0
-- ARROW_JEMALLOC_BUILD_VERSION: 5.2.1
-- ARROW_LZ4_BUILD_VERSION: v1.9.2
-- ARROW_MIMALLOC_BUILD_VERSION: v1.6.4
-- ARROW_ORC_BUILD_VERSION: 1.6.2
-- ARROW_PROTOBUF_BUILD_VERSION: v3.13.0
-- ARROW_RAPIDJSON_BUILD_VERSION: 1a803826f1197b5e30703afe4b9c0e7dd48074f5
-- ARROW_RE2_BUILD_VERSION: 2019-08-01
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.8
-- ARROW_THRIFT_BUILD_VERSION: 0.12.0
-- ARROW_THRIFT_BUILD_MD5_CHECKSUM: 3deebbb4d1ca77dd9c9e009a1ea02183
-- ARROW_UTF8PROC_BUILD_VERSION: v2.5.0
-- ARROW_ZLIB_BUILD_VERSION: 1.2.11
-- ARROW_ZSTD_BUILD_VERSION: v1.4.5
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE 
-- Looking for __SIZEOF_INT128__
-- Looking for __SIZEOF_INT128__ - found
-- Boost include dir: /tmp/RtmpcOhh4x/file86c71a6ed76f/boost_ep-prefix/src/boost_ep
-- Boost libraries: boost_system_static;boost_filesystem_static
-- Found OpenSSL: /usr/lib64/libcrypto.so (found suitable version "1.0.2k", minimum required is "1.0.2") 
-- Found OpenSSL Crypto Library: /usr/lib64/libcrypto.so
-- Building with OpenSSL (Version: 1.0.2k) support
Building Apache Thrift from source
-- Building (vendored) jemalloc from source
-- Building (vendored) mimalloc from source
-- Building RapidJSON from source
-- Building ZLIB from source
-- Building RE2 from source
-- Found hdfs.h at: /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp/thirdparty/hadoop/include/hdfs.h
Building AWS C++ SDK from source
-- Found CURL: /usr/lib64/libcurl.so (found version "7.29.0") 
-- Found AWS SDK headers: /tmp/RtmpcOhh4x/file86c71a6ed76f/awssdk_ep-install/include
-- Found AWS SDK libraries: aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
-- All bundled static libraries: thrift::thrift;jemalloc::jemalloc;mimalloc::mimalloc;ZLIB::ZLIB;re2::re2;aws-cpp-sdk-identity-management;aws-cpp-sdk-sts;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-s3;aws-cpp-sdk-core;AWS::aws-c-event-stream;AWS::aws-checksums;AWS::aws-c-common
-- CMAKE_C_FLAGS: -I/N/soft/rhel7/uuid/1.0.3/include -O3 -DNDEBUG -Wall -msse4.2 
-- CMAKE_CXX_FLAGS: -O3 -DNDEBUG -Wall -msse4.2 
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include 
-- Creating bundled static library target arrow_bundled_dependencies at /tmp/RtmpcOhh4x/file86c71a6ed76f/release/libarrow_bundled_dependencies.a
-- ---------------------------------------------------------------------
-- Arrow version: 3.0.0
-- 
-- Build configuration summary:
-- Generator: Ninja
-- Build type: RELEASE
-- Source directory: /tmp/RtmpcOhh4x/file86c77d985651/apache-arrow-3.0.0/cpp
-- Install prefix: /tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow/libarrow/arrow-3.0.0
-- 
-- Compile and link options:
-- 
-- ARROW_CXXFLAGS="" [default=""]
-- Compiler flags to append when compiling Arrow
-- ARROW_BUILD_STATIC=ON [default=ON]
-- Build static libraries
-- ARROW_BUILD_SHARED=OFF [default=ON]
-- Build shared libraries
-- ARROW_PACKAGE_KIND="" [default=""]
-- Arbitrary string that identifies the kind of package
-- (for informational purposes)
-- ARROW_GIT_ID="" [default=""]
-- The Arrow git commit id (if any)
-- ARROW_GIT_DESCRIPTION="" [default=""]
-- The Arrow git commit description (if any)
-- ARROW_NO_DEPRECATED_API=OFF [default=OFF]
-- Exclude deprecated APIs from build
-- ARROW_USE_CCACHE=ON [default=ON]
-- Use ccache when compiling (if available)
-- ARROW_USE_LD_GOLD=OFF [default=OFF]
-- Use ld.gold for linking on Linux (if available)
-- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
-- Use precompiled headers when compiling
-- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512]
-- Compile-time SIMD optimization level
-- ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX]
-- Max runtime SIMD optimization level
-- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
-- Arm64 arch and extensions
-- ARROW_ALTIVEC=ON [default=ON]
-- Build with Altivec if compiler has support
-- ARROW_RPATH_ORIGIN=OFF [default=OFF]
-- Build Arrow libraries with RATH set to $ORIGIN
-- ARROW_INSTALL_NAME_RPATH=ON [default=ON]
-- Build Arrow libraries with install_name set to @rpath
-- ARROW_GGDB_DEBUG=ON [default=ON]
-- Pass -ggdb flag to debug builds
-- 
-- Test and benchmark options:
-- 
-- ARROW_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Arrow examples
-- ARROW_BUILD_TESTS=OFF [default=OFF]
-- Build the Arrow googletest unit tests
-- ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
-- Enable timing-sensitive tests
-- ARROW_BUILD_INTEGRATION=OFF [default=OFF]
-- Build the Arrow integration test executables
-- ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
-- Build the Arrow micro benchmarks
-- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
-- Build the Arrow micro reference benchmarks
-- ARROW_TEST_LINKAGE=static [default=shared|static]
-- Linkage of Arrow libraries with unit tests executables.
-- ARROW_FUZZING=OFF [default=OFF]
-- Build Arrow Fuzzing executables
-- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
-- Enable unit tests which use large memory
-- 
-- Lint options:
-- 
-- ARROW_ONLY_LINT=OFF [default=OFF]
-- Only define the lint and check-format targets
-- ARROW_VERBOSE_LINT=OFF [default=OFF]
-- If off, 'quiet' flags will be passed to linting tools
-- ARROW_GENERATE_COVERAGE=OFF [default=OFF]
-- Build with C++ code coverage enabled
-- 
-- Checks options:
-- 
-- ARROW_TEST_MEMCHECK=OFF [default=OFF]
-- Run the test suite using valgrind --tool=memcheck
-- ARROW_USE_ASAN=OFF [default=OFF]
-- Enable Address Sanitizer checks
-- ARROW_USE_TSAN=OFF [default=OFF]
-- Enable Thread Sanitizer checks
-- ARROW_USE_UBSAN=OFF [default=OFF]
-- Enable Undefined Behavior sanitizer checks
-- 
-- Project component options:
-- 
-- ARROW_BUILD_UTILITIES=OFF [default=OFF]
-- Build Arrow commandline utilities
-- ARROW_COMPUTE=ON [default=OFF]
-- Build the Arrow Compute Modules
-- ARROW_CSV=ON [default=OFF]
-- Build the Arrow CSV Parser Module
-- ARROW_CUDA=OFF [default=OFF]
-- Build the Arrow CUDA extensions (requires CUDA toolkit)
-- ARROW_DATASET=ON [default=OFF]
-- Build the Arrow Dataset Modules
-- ARROW_FILESYSTEM=ON [default=OFF]
-- Build the Arrow Filesystem Layer
-- ARROW_FLIGHT=OFF [default=OFF]
-- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
-- ARROW_GANDIVA=OFF [default=OFF]
-- Build the Gandiva libraries
-- ARROW_HDFS=OFF [default=OFF]
-- Build the Arrow HDFS bridge
-- ARROW_HIVESERVER2=OFF [default=OFF]
-- Build the HiveServer2 client and Arrow adapter
-- ARROW_IPC=ON [default=ON]
-- Build the Arrow IPC extensions
-- ARROW_JEMALLOC=ON [default=ON]
-- Build the Arrow jemalloc-based allocator
-- ARROW_JNI=OFF [default=OFF]
-- Build the Arrow JNI lib
-- ARROW_JSON=ON [default=OFF]
-- Build Arrow with JSON support (requires RapidJSON)
-- ARROW_MIMALLOC=ON [default=OFF]
-- Build the Arrow mimalloc-based allocator
-- ARROW_PARQUET=ON [default=OFF]
-- Build the Parquet libraries
-- ARROW_ORC=OFF [default=OFF]
-- Build the Arrow ORC adapter
-- ARROW_PLASMA=OFF [default=OFF]
-- Build the plasma object store along with Arrow
-- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
-- Build the plasma object store java client
-- ARROW_PYTHON=OFF [default=OFF]
-- Build the Arrow CPython extensions
-- ARROW_S3=ON [default=OFF]
-- Build Arrow with S3 support (requires the AWS SDK for C++)
-- ARROW_TENSORFLOW=OFF [default=OFF]
-- Build Arrow with TensorFlow support enabled
-- ARROW_TESTING=OFF [default=OFF]
-- Build the Arrow testing libraries
-- 
-- Thirdparty toolchain options:
-- 
-- ARROW_DEPENDENCY_SOURCE=BUNDLED [default=AUTO|BUNDLED|SYSTEM|CONDA|BREW]
-- Method to use for acquiring arrow's build dependencies
-- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
-- Show output from ExternalProjects rather than just logging to files
-- ARROW_DEPENDENCY_USE_SHARED=ON [default=ON]
-- Link to shared libraries
-- ARROW_BOOST_USE_SHARED=OFF [default=ON]
-- Rely on boost shared libraries where relevant
-- ARROW_BROTLI_USE_SHARED=ON [default=ON]
-- Rely on Brotli shared libraries where relevant
-- ARROW_BZ2_USE_SHARED=ON [default=ON]
-- Rely on Bz2 shared libraries where relevant
-- ARROW_GFLAGS_USE_SHARED=ON [default=ON]
-- Rely on GFlags shared libraries where relevant
-- ARROW_GRPC_USE_SHARED=ON [default=ON]
-- Rely on gRPC shared libraries where relevant
-- ARROW_LZ4_USE_SHARED=ON [default=ON]
-- Rely on lz4 shared libraries where relevant
-- ARROW_OPENSSL_USE_SHARED=ON [default=ON]
-- Rely on OpenSSL shared libraries where relevant
-- ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
-- Rely on Protocol Buffers shared libraries where relevant
-- ARROW_THRIFT_USE_SHARED=ON [default=ON]
-- Rely on thrift shared libraries where relevant
-- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
-- Rely on utf8proc shared libraries where relevant
-- ARROW_SNAPPY_USE_SHARED=ON [default=ON]
-- Rely on snappy shared libraries where relevant
-- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
-- Rely on utf8proc shared libraries where relevant
-- ARROW_ZSTD_USE_SHARED=ON [default=ON]
-- Rely on zstd shared libraries where relevant
-- ARROW_USE_GLOG=OFF [default=OFF]
-- Build libraries with glog support for pluggable logging
-- ARROW_WITH_BACKTRACE=ON [default=ON]
-- Build with backtrace support
-- ARROW_WITH_BROTLI=OFF [default=OFF]
-- Build with Brotli compression
-- ARROW_WITH_BZ2=OFF [default=OFF]
-- Build with BZ2 compression
-- ARROW_WITH_LZ4=OFF [default=OFF]
-- Build with lz4 compression
-- ARROW_WITH_SNAPPY=OFF [default=OFF]
-- Build with Snappy compression
-- ARROW_WITH_ZLIB=ON [default=OFF]
-- Build with zlib compression
-- ARROW_WITH_ZSTD=OFF [default=OFF]
-- Build with zstd compression
-- ARROW_WITH_UTF8PROC=OFF [default=ON]
-- Build with support for Unicode properties using the utf8proc library
-- (only used if ARROW_COMPUTE is ON)
-- ARROW_WITH_RE2=ON [default=ON]
-- Build with support for regular expressions using the re2 library
-- (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON)
-- 
-- Parquet options:
-- 
-- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
-- Depend only on Thirdparty headers to build libparquet.
-- Always OFF if building binaries
-- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
-- Build the Parquet executable CLI tools. Requires static libraries to be built.
-- PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Parquet examples. Requires static libraries to be built.
-- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
-- Build support for encryption. Fail if OpenSSL is not found
-- 
-- Gandiva options:
-- 
-- ARROW_GANDIVA_JAVA=OFF [default=OFF]
-- Build the Gandiva JNI wrappers
-- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
-- Include -static-libstdc++ -static-libgcc when linking with
-- Gandiva static libraries
-- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
-- Compiler flags to append when pre-compiling Gandiva operations
-- 
-- Advanced developer options:
-- 
-- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
-- Compile with extra error context (line numbers, code)
-- ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
-- If enabled install ONLY targets that have already been built. Please be
-- advised that if this is enabled 'install' will fail silently on components
-- that have not been built
-- Outputting build configuration summary to /tmp/RtmpcOhh4x/file86c71a6ed76f/cmake_summary.json
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/RtmpcOhh4x/file86c71a6ed76f
+ /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake --build . --target install
[1/130] Creating directories for 'mimalloc_ep'
[2/130] Creating directories for 'zlib_ep'
[3/130] Creating directories for 'aws_checksums_ep'
[4/130] Creating directories for 'aws_c_common_ep'
[5/130] Creating directories for 'boost_ep'
[6/130] Creating directories for 're2_ep'
[7/130] Creating directories for 'jemalloc_ep'
[8/130] Creating directories for 'rapidjson_ep'
[9/130] Performing download step (download, verify and extract) for 'mimalloc_ep'
-- Downloading...
 dst='/tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
 timeout='none'
 inactivity timeout='none'
-- Using src='https://github.com/microsoft/mimalloc/archive/v1.6.4.tar.gz'
-- [download 100% complete]
-- [download 1% complete]
-- [download 3% complete]
-- [download 5% complete]
-- [download 8% complete]
-- [download 13% complete]
-- [download 27% complete]
-- [download 31% complete]
-- [download 52% complete]
-- [download 54% complete]
-- [download 76% complete]
-- [download 97% complete]
-- [download 100% complete]
-- Downloading... done
-- extracting...
 src='/tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep-prefix/src/v1.6.4.tar.gz'
 dst='/tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep-prefix/src/mimalloc_ep'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[10/130] No update step for 'mimalloc_ep'
[11/130] No patch step for 'mimalloc_ep'
[12/130] Performing download step (download, verify and extract) for 'aws_checksums_ep'
-- aws_checksums_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-download-*.log
[13/130] Performing download step (download, verify and extract) for 'jemalloc_ep'
-- jemalloc_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
[14/130] No update step for 'aws_checksums_ep'
[15/130] No update step for 'jemalloc_ep'
[16/130] Performing download step (download, verify and extract) for 're2_ep'
-- re2_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log
[17/130] No patch step for 'aws_checksums_ep'
[18/130] Performing patch step for 'jemalloc_ep'
[19/130] No update step for 're2_ep'
[20/130] Performing download step (download, verify and extract) for 'rapidjson_ep'
-- rapidjson_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/src/rapidjson_ep-stamp/rapidjson_ep-download-*.log
[21/130] No patch step for 're2_ep'
[22/130] Performing download step (download, verify and extract) for 'zlib_ep'
-- zlib_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-download-*.log
[23/130] No update step for 'rapidjson_ep'
[24/130] Performing download step (download, verify and extract) for 'aws_c_common_ep'
-- aws_c_common_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-download-*.log
[25/130] No update step for 'zlib_ep'
[26/130] No patch step for 'rapidjson_ep'
[27/130] No update step for 'aws_c_common_ep'
[28/130] No patch step for 'zlib_ep'
[29/130] No patch step for 'aws_c_common_ep'
[30/130] Performing download step (download, verify and extract) for 'boost_ep'
-- boost_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log
[31/130] No update step for 'boost_ep'
[32/130] No patch step for 'boost_ep'
[33/130] No configure step for 'boost_ep'
[34/130] No build step for 'boost_ep'
[35/130] No install step for 'boost_ep'
[36/130] Completed 'boost_ep'
[37/130] Creating directories for 'thrift_ep'
[38/130] Performing configure step for 'aws_checksums_ep'
-- aws_checksums_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-configure-*.log
[39/130] Performing configure step for 'rapidjson_ep'
-- rapidjson_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
[40/130] Performing configure step for 're2_ep'
-- re2_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log
[41/130] Performing build step for 'rapidjson_ep'
-- rapidjson_ep build command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
[42/130] Performing build step for 'aws_checksums_ep'
FAILED: aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build awssdk_ep-install/lib/libaws-checksums.a 
cd /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-build && /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -P /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-RELEASE.cmake && /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -E touch /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build
CMake Error at /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-RELEASE.cmake:37 (message):
 Command failed: 1

'/tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake' '--build' '.'

See also

/tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-*.log

-- stdout output is:
[1/12] Building C object CMakeFiles/aws-checksums.dir/source/arm/crc32c_arm.c.o
[2/12] Building C object CMakeFiles/aws-checksums.dir/source/arm/cpuid_arm.c.o
[3/12] Building C object CMakeFiles/aws-checksums.dir/source/crc.c.o
[4/12] Building C object CMakeFiles/aws-checksums.dir/source/cpuid_generic.c.o
[5/12] Building C object CMakeFiles/aws-checksums.dir/source/crc_jni.c.o
[6/12] Building C object CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o
FAILED: CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o 
/N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/include -I/tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/tests -I/N/soft/rhel7/uuid/1.0.3/include -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -I/N/soft/rhel7/uuid/1.0.3/include -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -fPIC -std=gnu99 -MD -MT CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o -MF CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o.d -o CMakeFiles/aws-checksums.dir/source/intel/crc32c_sse42_asm.c.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/source/intel/crc32c_sse42_asm.c
/tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/source/intel/crc32c_sse42_asm.c(305) (col. 92): catastrophic error: can't allocate register(s) " rsp rip zmm16 zmm17 zmm18 zmm19 zmm20 zmm21 zmm22 zmm23 zmm24 zmm25 zmm26 zmm27 zmm28 zmm29 zmm30 zmm31" for asm instruction

compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep/source/intel/crc32c_sse42_asm.c (code 4)
[7/12] Building C object CMakeFiles/aws-checksums.dir/source/intel/cpuid.c.o
[8/12] Building C object CMakeFiles/aws-checksums-tests.dir/tests/crc_test.c.o
[9/12] Building C object CMakeFiles/aws-checksums-tests.dir/tests/run_tests.c.o
[10/12] Building C object CMakeFiles/aws-checksums.dir/source/crc_sw.c.o
ninja: build stopped: subcommand failed.

-- stderr output is:

CMake Error at /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_checksums_ep-prefix/src/aws_checksums_ep-stamp/aws_checksums_ep-build-RELEASE.cmake:47 (message):
 Stopping after outputting logs.

[43/130] Performing install step for 'rapidjson_ep'
-- rapidjson_ep install command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
[44/130] Performing download step (download, verify and extract) for 'thrift_ep'
-- thrift_ep download command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
[45/130] Performing configure step for 'mimalloc_ep'
-- The C compiler identification is Intel 19.0.5.20190815
-- The CXX compiler identification is Intel 19.0.5.20190815
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Use the C++ compiler to compile (MI_USE_CXX=ON)
-- 
-- Library base name: mimalloc
-- Build type : release
-- Install directory: /tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-1.6
-- Build targets : static
-- 
-- Configuring done
-- Generating done
CMake Warning:
 Manually-specified variables were not used by the project:

CMAKE_EXPORT_NO_PACKAGE_REGISTRY
 CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY

-- Build files have been written to: /tmp/RtmpcOhh4x/file86c71a6ed76f/mimalloc_ep-prefix/src/mimalloc_ep-build
[46/130] Performing configure step for 'zlib_ep'
-- zlib_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/zlib_ep-prefix/src/zlib_ep-stamp/zlib_ep-configure-*.log
[47/130] Building CXX object src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_1_cxx.cxx.o
[48/130] Performing build step for 're2_ep'
FAILED: re2_ep-prefix/src/re2_ep-stamp/re2_ep-build re2_ep-install/lib/libre2.a 
cd /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-build && /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -P /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-RELEASE.cmake && /tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake -E touch /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build
CMake Error at /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-RELEASE.cmake:37 (message):
 Command failed: 1

'/tmp/RtmpcOhh4x/file86c748ae88dc/cmake-3.19.2-Linux-x86_64/bin/cmake' '--build' '.'

See also

/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log

-- stdout output is:
...skipping to end...
2_ep-prefix/src/re2_ep/re2/testing/tester.h(14),
 from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/exhaustive_tester.cc(20):
/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
 static_assert(std::is_pod<T>::value,
 ^
 detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"

compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/exhaustive_tester.cc (code 2)
[34/95] Building CXX object CMakeFiles/re2.dir/re2/compile.cc.o
FAILED: CMakeFiles/re2.dir/re2/compile.cc.o 
/N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/re2.dir/re2/compile.cc.o -MF CMakeFiles/re2.dir/re2/compile.cc.o.d -o CMakeFiles/re2.dir/re2/compile.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/compile.cc
In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/compile.cc(19):
/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
 static_assert(std::is_pod<T>::value,
 ^
 detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"

compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/compile.cc (code 2)
[35/95] Building CXX object CMakeFiles/exhaustive2_test.dir/re2/testing/exhaustive2_test.cc.o
[36/95] Building CXX object CMakeFiles/re2.dir/re2/dfa.cc.o
FAILED: CMakeFiles/re2.dir/re2/dfa.cc.o 
/N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/re2.dir/re2/dfa.cc.o -MF CMakeFiles/re2.dir/re2/dfa.cc.o.d -o CMakeFiles/re2.dir/re2/dfa.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/dfa.cc
In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/dfa.cc(45):
/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
 static_assert(std::is_pod<T>::value,
 ^
 detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"

compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/dfa.cc (code 2)
[37/95] Building CXX object CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o
FAILED: CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o 
/N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o -MF CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o.d -o CMakeFiles/dfa_test.dir/re2/testing/dfa_test.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/dfa_test.cc
In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/dfa_test.cc(13):
/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
 static_assert(std::is_pod<T>::value,
 ^
 detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"

compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/dfa_test.cc (code 2)
[38/95] Building CXX object CMakeFiles/required_prefix_test.dir/re2/testing/required_prefix_test.cc.o
[39/95] Building CXX object CMakeFiles/re2.dir/re2/filtered_re2.cc.o
[40/95] Building CXX object CMakeFiles/exhaustive3_test.dir/re2/testing/exhaustive3_test.cc.o
[41/95] Building CXX object CMakeFiles/testing.dir/re2/testing/null_walker.cc.o
[42/95] Building CXX object CMakeFiles/testing.dir/re2/testing/tester.cc.o
FAILED: CMakeFiles/testing.dir/re2/testing/tester.cc.o 
/N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/testing.dir/re2/testing/tester.cc.o -MF CMakeFiles/testing.dir/re2/testing/tester.cc.o.d -o CMakeFiles/testing.dir/re2/testing/tester.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/tester.cc
In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/tester.h(14),
 from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/tester.cc(16):
/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
 static_assert(std::is_pod<T>::value,
 ^
 detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"

compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/tester.cc (code 2)
[43/95] Building CXX object CMakeFiles/testing.dir/re2/testing/string_generator.cc.o
[44/95] Building CXX object CMakeFiles/parse_test.dir/util/test.cc.o
[45/95] Building CXX object CMakeFiles/regexp_test.dir/util/test.cc.o
[46/95] Building CXX object CMakeFiles/charclass_test.dir/util/test.cc.o
[47/95] Building CXX object CMakeFiles/possible_match_test.dir/util/test.cc.o
[48/95] Building CXX object CMakeFiles/re2_arg_test.dir/util/test.cc.o
[49/95] Building CXX object CMakeFiles/search_test.dir/util/test.cc.o
[50/95] Building CXX object CMakeFiles/re2_test.dir/util/test.cc.o
[51/95] Building CXX object CMakeFiles/re2.dir/re2/mimics_pcre.cc.o
[52/95] Building CXX object CMakeFiles/re2.dir/re2/tostring.cc.o
[53/95] Building CXX object CMakeFiles/search_test.dir/re2/testing/search_test.cc.o
FAILED: CMakeFiles/search_test.dir/re2/testing/search_test.cc.o 
/N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/search_test.dir/re2/testing/search_test.cc.o -MF CMakeFiles/search_test.dir/re2/testing/search_test.cc.o.d -o CMakeFiles/search_test.dir/re2/testing/search_test.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/search_test.cc
In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/search_test.cc(6):
/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
 static_assert(std::is_pod<T>::value,
 ^
 detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"

compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/search_test.cc (code 2)
[54/95] Building CXX object CMakeFiles/charclass_test.dir/re2/testing/charclass_test.cc.o
[55/95] Building CXX object CMakeFiles/simplify_test.dir/re2/testing/simplify_test.cc.o
[56/95] Building CXX object CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o
FAILED: CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o 
/N/soft/rhel7/intel/19.5/compilers_and_libraries_2019.5.281/linux/bin/intel64/icpc -I/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -O3 -DNDEBUG -O3 -DNDEBUG -fPIC -pthread -MD -MT CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o -MF CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o.d -o CMakeFiles/possible_match_test.dir/re2/testing/possible_match_test.cc.o -c /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/possible_match_test.cc
In file included from /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/possible_match_test.cc(12):
/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/util/pod_array.h(16): error: static assertion failed with "T must be POD"
 static_assert(std::is_pod<T>::value,
 ^
 detected during instantiation of class "re2::PODArray<T> [with T=re2::Prog::Inst]" at line 413 of "/tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/prog.h"

compilation aborted for /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep/re2/testing/possible_match_test.cc (code 2)
[57/95] Building CXX object CMakeFiles/testing.dir/util/pcre.cc.o
[58/95] Building CXX object CMakeFiles/set_test.dir/re2/testing/set_test.cc.o
[59/95] Building CXX object CMakeFiles/re2_arg_test.dir/re2/testing/re2_arg_test.cc.o
[60/95] Building CXX object CMakeFiles/re2.dir/re2/simplify.cc.o
[61/95] Building CXX object CMakeFiles/re2.dir/re2/prefilter.cc.o
[62/95] Building CXX object CMakeFiles/filtered_re2_test.dir/re2/testing/filtered_re2_test.cc.o
[63/95] Building CXX object CMakeFiles/testing.dir/re2/testing/regexp_generator.cc.o
[64/95] Building CXX object CMakeFiles/parse_test.dir/re2/testing/parse_test.cc.o
[65/95] Building CXX object CMakeFiles/re2.dir/re2/prefilter_tree.cc.o
[66/95] Building CXX object CMakeFiles/regexp_test.dir/re2/testing/regexp_test.cc.o
[67/95] Building CXX object CMakeFiles/re2.dir/re2/parse.cc.o
[68/95] Building CXX object CMakeFiles/re2.dir/re2/regexp.cc.o
[69/95] Building CXX object CMakeFiles/re2_test.dir/re2/testing/re2_test.cc.o
ninja: build stopped: subcommand failed.

-- stderr output is:

CMake Error at /tmp/RtmpcOhh4x/file86c71a6ed76f/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-RELEASE.cmake:47 (message):
 Stopping after outputting logs.

[49/130] Performing configure step for 'aws_c_common_ep'
-- aws_c_common_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/aws_c_common_ep-prefix/src/aws_c_common_ep-stamp/aws_c_common_ep-configure-*.log
[50/130] Building CXX object src/arrow/dataset/CMakeFiles/arrow_dataset_objlib.dir/Unity/unity_0_cxx.cxx.o
[51/130] Performing configure step for 'jemalloc_ep'
-- jemalloc_ep configure command succeeded. See also /tmp/RtmpcOhh4x/file86c71a6ed76f/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
ninja: build stopped: subcommand failed.
+ popd
/tmp/RtmpXrLXgg/R.INSTALL86b15f3183b3/arrow
------------------------- NOTE ---------------------------
See https://arrow.apache.org/docs/r/articles/install.html
for help installing Arrow C++ libraries
---------------------------------------------------------
** libs
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c array.cpp -o array.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c array_from_vector.cpp -o array_from_vector.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c array_to_vector.cpp -o array_to_vector.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c arraydata.cpp -o arraydata.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c arrowExports.cpp -o arrowExports.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c buffer.cpp -o buffer.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c chunkedarray.cpp -o chunkedarray.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c compression.cpp -o compression.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c compute.cpp -o compute.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c csv.cpp -o csv.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c dataset.cpp -o dataset.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c datatype.cpp -o datatype.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c expression.cpp -o expression.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c feather.cpp -o feather.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c field.cpp -o field.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c filesystem.cpp -o filesystem.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c io.cpp -o io.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c json.cpp -o json.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c memorypool.cpp -o memorypool.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c message.cpp -o message.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c parquet.cpp -o parquet.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c py-to-r.cpp -o py-to-r.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c recordbatch.cpp -o recordbatch.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c recordbatchreader.cpp -o recordbatchreader.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c recordbatchwriter.cpp -o recordbatchwriter.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c scalar.cpp -o scalar.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c schema.cpp -o schema.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c symbols.cpp -o symbols.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c table.cpp -o table.o
icpc -std=gnu++11 -I"/N/soft/rhel7/r/3.6.0/lib64/R/include" -DNDEBUG -I"/geode2/soft/hps/rhel7/r/3.6.0/lib64/R/library/cpp11/include" -I/usr/local/include -fpic -g -O2 -c threadpool.cpp -o threadpool.o
icpc -std=gnu++11 -shared -L/N/soft/rhel7/r/3.6.0/lib64/R/lib -L//N/soft/rhel7/zlib/gnu/1.2.11/lib -L/N/soft/rhel7/bzip2/1.0.6/lib -L/N/soft/rhel7/xz/5.2.4/lib -L/N/soft/rhel7/pcre/8.40/lib -L/N/soft/rhel7/cairo/1.15.4/lib -lcairo -o arrow.so array.o array_from_vector.o array_to_vector.o arraydata.o arrowExports.o buffer.o chunkedarray.o compression.o compute.o csv.o dataset.o datatype.o expression.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o py-to-r.o recordbatch.o recordbatchreader.o recordbatchwriter.o scalar.o schema.o symbols.o table.o threadpool.o -L/N/soft/rhel7/r/3.6.0/lib64/R/lib -lR
installing to /geode2/home/u070/rrokde/Carbonate/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (arrow)

The downloaded source packages are in
 ‘/tmp/Rtmp8e3zPn/downloaded_packages’

Attaching package: ‘arrow’

The following object is masked from ‘package:utils’:

timestamp

Environment: Linux i11.red.uits.iu.edu 3.10.0-1160.15.2.el7.x86_64 #1 SMP Thu Jan 21 16:15:07 EST 2021 x86_64 x86_64 x86_64 GNU/Linux

RHEL Reporter: Rohit Rokde

Note: This issue was originally created as ARROW-12174. Please see the migration documentation for further details.

asfimport commented 3 years ago

Antoine Pitrou / @pitrou: It looks like you are using the Intel C/C++ compiler and it fails to compile Arrow. I would suggest switching to gcc or clang to try and solve your issue.

(if you are motivated enough, you can also try to submit a PR to allow Arrow to compile with icc)

asfimport commented 3 years ago

Rohit Rokde: Hi @pitrou, thanks for the update. I uninstalled the icc, gcc stepped in and it worked. But now I have this new error when I use the read_parquet() function call.

 


Error: IOError: NotImplemented: Support for codec 'snappy' not built

 

And I don't have root permissions to install libsnappy-dev. Compiling the source for that lib and making symlinks will be too tedious to resolve any possible dependencies. This idea was suggested here

 

Thanks for your help. I will close this issue for now.