Closed asfimport closed 1 year ago
Nicola Crane / @thisisnic:
Thanks for reporting this [~wtacct77]
. A couple of questions; is there are longer installation log that you can provide? It'll give us a little more context to see exactly what has gone wrong as the last message isn't always the most relevant one for diagnosing the issue.
That said, the last message there refers to something to do with AWS. Looking at the dependencies list in the installation guide, it looks like you have a sufficient version of gcc, but would you mind you confirming the versions of CURL and OpenSSL that you have installed, so I can rule out a dependency mismatch?
Wayne Tu: Thank you so much Nicola for taking a look at my post. I ran an installation of arrow version 9.0.0 but got the same undefined symbol error. We want to enable S3. Both CURL and OpenSSL seem to meet the requirements of dependencies. please refer to the following for full build log:
# rpm -qi libcurl-devel-7.29.0-59.el7_9.1.x86_64
Name : libcurl-devel
Version : 7.29.0
Release : 59.el7_9.1
Architecture: x86_64
Install Date: Tue 11 Jan 2022 05:34:39 PM PST
Group : Development/Libraries
Size : 638991
License : MIT
Signature : RSA/SHA256, Fri 31 Jul 2020 06:59:59 AM PDT, Key ID 199e2f91fd431d51
Source RPM : curl-7.29.0-59.el7_9.1.src.rpm
Build Date : Fri 31 Jul 2020 06:20:34 AM PDT
Build Host : x86-037.build.eng.bos.redhat.com
Relocations : (not relocatable)
Packager : Red Hat, Inc. <http://bugzilla.redhat.com/bugzilla>
Vendor : Red Hat, Inc.
URL : http://curl.haxx.se/
Summary : Files needed for building applications with libcurl
Description :
The libcurl-devel package includes header files and libraries necessary for
developing programs which use the libcurl library. It contains the API
documentation of the library, too.
# rpm -qi openssl-devel-1.0.2k-25.el7_9.x86_64
Name : openssl-devel
Epoch : 1
Version : 1.0.2k
Release : 25.el7_9
Architecture: x86_64
Install Date: Fri 15 Apr 2022 11:28:33 PM PDT
Group : Development/Libraries
Size : 3269305
License : OpenSSL
Signature : RSA/SHA256, Wed 23 Mar 2022 09:38:15 AM PDT, Key ID 199e2f91fd431d51
Source RPM : openssl-1.0.2k-25.el7_9.src.rpm
Build Date : Wed 23 Mar 2022 07:10:06 AM PDT
Build Host : x86-vm-37.build.eng.bos.redhat.com
Relocations : (not relocatable)
Packager : Red Hat, Inc. <http://bugzilla.redhat.com/bugzilla>
Vendor : Red Hat, Inc.
URL : http://www.openssl.org/
Summary : Files for development of applications which will use OpenSSL
Description :
OpenSSL is a toolkit for supporting cryptography. The openssl-devel
package contains include files needed to develop applications which
support various cryptographic algorithms and protocols.
$ R
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> Sys.setenv("NOT_CRAN"=TRUE)
> Sys.setenv("LIBARROW_BINARY" = FALSE)
> Sys.setenv("ARROW_R_DEV" = TRUE)
> Sys.setenv("ARROW_USE_PKG_CONFIG" = FALSE)
> Sys.setenv(ARROW_S3 = "ON")
> Sys.setenv(CMAKE = "/apps/cmake-3.21.4-linux-x86_64/bin/cmake")
> sessionInfo()
R version 4.1.3 (2022-03-10)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server 7.9 (Maipo)
Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblasp-r0.3.3.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.1.3
>
> arrow::arrow_available()
Error in loadNamespace(x) : there is no package called ‘arrow’
>
> system("gcc -v")
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/opt/rh/devtoolset-8/root/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper
Target: x86_64-redhat-linux
Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/opt/rh/devtoolset-8/root/usr --mandir=/opt/rh/devtoolset-8/root/usr/share/man --infodir=/opt/rh/devtoolset-8/root/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --with-default-libstdcxx-abi=gcc4-compatible --enable-plugin --enable-initfini-array --with-isl=/builddir/build/BUILD/gcc-8.3.1-20190311/obj-x86_64-redhat-linux/isl-install --disable-libmpx --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux
Thread model: posix
gcc version 8.3.1 20190311 (Red Hat 8.3.1-3) (GCC)
>
> mpkg <- "http://myrepo/src/contrib/arrow/9.0.0/arrow_9.0.0.tar.gz"
>
> install.packages(mpkg, repos=NULL, type="source") Installing package into ‘~/user1/R/x86_64-pc-linux-gnu-library/4.1.3’
(as ‘lib’ is unspecified)
trying URL 'http://myrepo/src/contrib/arrow/9.0.0/arrow_9.0.0.tar.gz'
Content type 'application/x-gzip' length 4921787 bytes (4.7 MB)
==================================================
downloaded 4.7 MB
* installing *source* package ‘arrow’ ...
** package ‘arrow’ successfully unpacked and MD5 sums checked
** using staged installation
*** Found local C++ source: 'tools/cpp'
*** Building libarrow from source
For build options and troubleshooting, see the install vignette:
https://cran.r-project.org/web/packages/arrow/vignettes/install.html
*** Building with MAKEFLAGS= -j2
**** cmake: /usr/local/cmake-3.21.4-linux-x86_64/bin/cmake
**** arrow with SOURCE_DIR='tools/cpp' BUILD_DIR='/apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae' DEST_DIR='libarrow/arrow-9.0.0' CMAKE='/usr/local/cmake-3.21.4-linux-x86_64/bin/cmake' EXTRA_CMAKE_FLAGS='' CC='/opt/rh/devtoolset-8/root/usr/bin/gcc' CXX='g++ -std=gnu++11' LDFLAGS='-L/usr/local/lib' ARROW_S3='ON' ARROW_GCS='ON' ARROW_MIMALLOC='ON'
++ pwd
+ : /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow
+ : tools/cpp
+ : /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae
+ : libarrow/arrow-9.0.0
+ : /usr/local/cmake-3.21.4-linux-x86_64/bin/cmake
++ cd tools/cpp
++ pwd
+ SOURCE_DIR=/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/tools/cpp
++ mkdir -p libarrow/arrow-9.0.0
++ cd libarrow/arrow-9.0.0
++ pwd
+ DEST_DIR=/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0
+ '[' false '!=' '' ']'
++ echo false
++ tr '[:upper:]' '[:lower:]'
+ LIBARROW_MINIMAL=false
+ '[' false = false ']'
+ ARROW_DEFAULT_PARAM=ON
+ mkdir -p /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae
+ pushd /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae
/apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow
+ /usr/local/cmake-3.21.4-linux-x86_64/bin/cmake -DARROW_BOOST_USE_SHARED=OFF -DARROW_BUILD_TESTS=OFF -DARROW_BUILD_SHARED=OFF -DARROW_BUILD_STATIC=ON -DARROW_COMPUTE=ON -DARROW_CSV=ON -DARROW_DATASET=ON -DARROW_DEPENDENCY_SOURCE=AUTO -DAWSSDK_SOURCE= -DARROW_FILESYSTEM=ON -DARROW_GCS=ON -DARROW_JEMALLOC=ON -DARROW_MIMALLOC=ON -DARROW_JSON=ON -DARROW_PARQUET=ON -DARROW_S3=ON -DARROW_WITH_BROTLI=ON -DARROW_WITH_BZ2=ON -DARROW_WITH_LZ4=ON -DARROW_WITH_RE2=ON -DARROW_WITH_SNAPPY=ON -DARROW_WITH_UTF8PROC=ON -DARROW_WITH_ZLIB=ON -DARROW_WITH_ZSTD=ON -DARROW_VERBOSE_THIRDPARTY_BUILD=OFF -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_INSTALL_PREFIX=/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0 -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_UNITY_BUILD=OFF -Dxsimd_SOURCE= -G 'Unix Makefiles' /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/tools/cpp
-- Building using CMake version: 3.21.4
-- The C compiler identification is GNU 8.3.1
-- The CXX compiler identification is GNU 8.3.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/rh/devtoolset-8/root/usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/rh/devtoolset-8/root/usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 9.0.0 (full: '9.0.0')
-- Arrow SO version: 900 (full: 900.0.0)
-- clang-tidy 12 not found
-- clang-format found, but version did not match "^clang-format version 12"
-- clang-format 12 not found
-- Could NOT find ClangTools (missing: CLANG_FORMAT_BIN CLANG_TIDY_BIN)
-- infer not found
fatal: Not a git repository (or any of the parent directories): .git
-- Found Python3: /apps/Python/3.9.12/bin/python3.9 (found version "3.9.12") found components: Interpreter
-- Found cpplint executable at /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/tools/cpp/build-support/cpplint.py
-- System processor: x86_64
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_AVX2
-- Performing Test CXX_SUPPORTS_AVX2 - Success
-- Performing Test CXX_SUPPORTS_AVX512
-- Performing Test CXX_SUPPORTS_AVX512 - Success
-- Arrow build warning level: PRODUCTION
-- Using ld linker
-- Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE=\{release,debug,...})
-- Build Type: RELEASE
-- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT
-- Performing Test CXX_LINKER_SUPPORTS_VERSION_SCRIPT - Success
-- Using AUTO approach to find dependencies
-- ARROW_ABSL_BUILD_VERSION: 20211102.0
-- ARROW_ABSL_BUILD_SHA256_CHECKSUM: dcf71b9cba8dc0ca9940c4b316a0c796be8fab42b070bb6b7cab62b48f0e66c4
-- ARROW_AWSSDK_BUILD_VERSION: 1.8.133
-- ARROW_AWSSDK_BUILD_SHA256_CHECKSUM: d6c495bc06be5e21dac716571305d77437e7cfd62a2226b8fe48d9ab5785a8d6
-- ARROW_AWS_CHECKSUMS_BUILD_VERSION: v0.1.12
-- ARROW_AWS_CHECKSUMS_BUILD_SHA256_CHECKSUM: 394723034b81cc7cd528401775bc7aca2b12c7471c92350c80a0e2fb9d2909fe
-- ARROW_AWS_C_COMMON_BUILD_VERSION: v0.6.9
-- ARROW_AWS_C_COMMON_BUILD_SHA256_CHECKSUM: 928a3e36f24d1ee46f9eec360ec5cebfe8b9b8994fe39d4fa74ff51aebb12717
-- ARROW_AWS_C_EVENT_STREAM_BUILD_VERSION: v0.1.5
-- ARROW_AWS_C_EVENT_STREAM_BUILD_SHA256_CHECKSUM: f1b423a487b5d6dca118bfc0d0c6cc596dc476b282258a3228e73a8f730422d4
-- ARROW_BOOST_BUILD_VERSION: 1.75.0
-- ARROW_BOOST_BUILD_SHA256_CHECKSUM: 267e04a7c0bfe85daf796dedc789c3a27a76707e1c968f0a2a87bb96331e2b61
-- ARROW_BROTLI_BUILD_VERSION: v1.0.9
-- ARROW_BROTLI_BUILD_SHA256_CHECKSUM: f9e8d81d0405ba66d181529af42a3354f838c939095ff99930da6aa9cdf6fe46
-- ARROW_BZIP2_BUILD_VERSION: 1.0.8
-- ARROW_BZIP2_BUILD_SHA256_CHECKSUM: ab5a03176ee106d3f0fa90e381da478ddae405918153cca248e682cd0c4a2269
-- ARROW_CARES_BUILD_VERSION: 1.17.2
-- ARROW_CARES_BUILD_SHA256_CHECKSUM: 4803c844ce20ce510ef0eb83f8ea41fa24ecaae9d280c468c582d2bb25b3913d
-- ARROW_CRC32C_BUILD_VERSION: 1.1.2
-- ARROW_CRC32C_BUILD_SHA256_CHECKSUM: ac07840513072b7fcebda6e821068aa04889018f24e10e46181068fb214d7e56
-- ARROW_GBENCHMARK_BUILD_VERSION: v1.6.0
-- ARROW_GBENCHMARK_BUILD_SHA256_CHECKSUM: 1f71c72ce08d2c1310011ea6436b31e39ccab8c2db94186d26657d41747c85d6
-- ARROW_GFLAGS_BUILD_VERSION: v2.2.2
-- ARROW_GFLAGS_BUILD_SHA256_CHECKSUM: 34af2f15cf7367513b352bdcd2493ab14ce43692d2dcd9dfc499492966c64dcf
-- ARROW_GLOG_BUILD_VERSION: v0.5.0
-- ARROW_GLOG_BUILD_SHA256_CHECKSUM: eede71f28371bf39aa69b45de23b329d37214016e2055269b3b5e7cfd40b59f5
-- ARROW_GOOGLE_CLOUD_CPP_BUILD_VERSION: v1.42.0
-- ARROW_GOOGLE_CLOUD_CPP_BUILD_SHA256_CHECKSUM: c06ae9aededbb8aa217a6d2453754daa40b815f9a4004bc4f2d2d215c79828aa
-- ARROW_GRPC_BUILD_VERSION: v1.46.3
-- ARROW_GRPC_BUILD_SHA256_CHECKSUM: d6cbf22cb5007af71b61c6be316a79397469c58c82a942552a62e708bce60964
-- ARROW_GTEST_BUILD_VERSION: 1.11.0
-- ARROW_GTEST_BUILD_SHA256_CHECKSUM: b4870bf121ff7795ba20d20bcdd8627b8e088f2d1dab299a031c1034eddc93d5
-- ARROW_JEMALLOC_BUILD_VERSION: 5.3.0
-- ARROW_JEMALLOC_BUILD_SHA256_CHECKSUM: 2db82d1e7119df3e71b7640219b6dfe84789bc0537983c3b7ac4f7189aecfeaa
-- ARROW_LZ4_BUILD_VERSION: 8f61d8eb7c6979769a484cde8df61ff7c4c77765
-- ARROW_LZ4_BUILD_SHA256_CHECKSUM: 5b072d848f2f93fddb97e1143e22c1bd7fa19fc8431ee69e21758190a88125b4
-- ARROW_MIMALLOC_BUILD_VERSION: v2.0.6
-- ARROW_MIMALLOC_BUILD_SHA256_CHECKSUM: 9f05c94cc2b017ed13698834ac2a3567b6339a8bde27640df5a1581d49d05ce5
-- ARROW_NLOHMANN_JSON_BUILD_VERSION: v3.10.5
-- ARROW_NLOHMANN_JSON_BUILD_SHA256_CHECKSUM: 5daca6ca216495edf89d167f808d1d03c4a4d929cef7da5e10f135ae1540c7e4
-- ARROW_OPENTELEMETRY_BUILD_VERSION: v1.4.1
-- ARROW_OPENTELEMETRY_BUILD_SHA256_CHECKSUM: 301b1ab74a664723560f46c29f228360aff1e2d63e930b963755ea077ae67524
-- ARROW_OPENTELEMETRY_PROTO_BUILD_VERSION: v0.17.0
-- ARROW_OPENTELEMETRY_PROTO_BUILD_SHA256_CHECKSUM: f269fbcb30e17b03caa1decd231ce826e59d7651c0f71c3b28eb5140b4bb5412
-- ARROW_ORC_BUILD_VERSION: 1.7.5
-- ARROW_ORC_BUILD_SHA256_CHECKSUM: b90cae5853e3ea0e5bf64e3883d09d871ec280536e0bb2cc52d08f79f0be0010
-- ARROW_PROTOBUF_BUILD_VERSION: v21.3
-- ARROW_PROTOBUF_BUILD_SHA256_CHECKSUM: 2f723218f6cb709ae4cdc4fb5ed56a5951fc5d466f0128ce4c946b8c78c8c49f
-- ARROW_RAPIDJSON_BUILD_VERSION: 232389d4f1012dddec4ef84861face2d2ba85709
-- ARROW_RAPIDJSON_BUILD_SHA256_CHECKSUM: b9290a9a6d444c8e049bd589ab804e0ccf2b05dc5984a19ed5ae75d090064806
-- ARROW_RE2_BUILD_VERSION: 2022-06-01
-- ARROW_RE2_BUILD_SHA256_CHECKSUM: f89c61410a072e5cbcf8c27e3a778da7d6fd2f2b5b1445cd4f4508bee946ab0f
-- ARROW_SNAPPY_BUILD_VERSION: 1.1.9
-- ARROW_SNAPPY_BUILD_SHA256_CHECKSUM: 75c1fbb3d618dd3a0483bff0e26d0a92b495bbe5059c8b4f1c962b478b6e06e7
-- ARROW_SNAPPY_OLD_BUILD_VERSION: 1.1.8
-- ARROW_SNAPPY_OLD_BUILD_SHA256_CHECKSUM: 16b677f07832a612b0836178db7f374e414f94657c138e6993cbfc5dcc58651f
-- ARROW_SUBSTRAIT_BUILD_VERSION: v0.6.0
-- ARROW_SUBSTRAIT_BUILD_SHA256_CHECKSUM: 7b8583b9684477e9027f417bbfb4febb8acfeb01923dcaa7cf0fd3f921d69c88
-- ARROW_THRIFT_BUILD_VERSION: 0.16.0
-- ARROW_THRIFT_BUILD_SHA256_CHECKSUM: f460b5c1ca30d8918ff95ea3eb6291b3951cf518553566088f3f2be8981f6209
-- ARROW_UCX_BUILD_VERSION: 1.12.1
-- ARROW_UCX_BUILD_SHA256_CHECKSUM: 9bef31aed0e28bf1973d28d74d9ac4f8926c43ca3b7010bd22a084e164e31b71
-- ARROW_UTF8PROC_BUILD_VERSION: v2.7.0
-- ARROW_UTF8PROC_BUILD_SHA256_CHECKSUM: 4bb121e297293c0fd55f08f83afab6d35d48f0af4ecc07523ad8ec99aa2b12a1
-- ARROW_XSIMD_BUILD_VERSION: 8.1.0
-- ARROW_XSIMD_BUILD_SHA256_CHECKSUM: d52551360d37709675237d2a0418e28f70995b5b7cdad7c674626bcfbbf48328
-- ARROW_ZLIB_BUILD_VERSION: 1.2.12
-- ARROW_ZLIB_BUILD_SHA256_CHECKSUM: 91844808532e5ce316b3c010929493c0244f3d37593afd6de04f71821d5136d9
-- ARROW_ZSTD_BUILD_VERSION: v1.5.2
-- ARROW_ZSTD_BUILD_SHA256_CHECKSUM: f7de13462f7a82c29ab865820149e778cbfe01087b3a55b5332707abf9db4a6e
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Looking for _M_ARM64
-- Looking for _M_ARM64 - not found
-- Looking for __SIZEOF_INT128__
-- Looking for __SIZEOF_INT128__ - found
-- Could NOT find Boost (missing: Boost_INCLUDE_DIR) (Required is at least version "1.58")
-- Boost include dir: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/boost_ep-prefix/src/boost_ep
CMake Warning at cmake_modules/FindSnappyAlt.cmake:25 (find_package):
By not providing "FindSnappy.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "Snappy", but
CMake did not find one.
Could not find a package configuration file provided by "Snappy" with any
of the following names:
SnappyConfig.cmake
snappy-config.cmake
Add the installation prefix of "Snappy" to CMAKE_PREFIX_PATH or set
"Snappy_DIR" to a directory containing one of the above files. If "Snappy"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:257 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:1137 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Found SnappyAlt: /usr/lib64/libsnappy.so
-- Providing CMake module for SnappyAlt
-- Checking for modules 'libbrotlicommon;libbrotlienc;libbrotlidec'
-- Found libbrotlicommon, version 1.0.7
-- Found libbrotlienc, version 1.0.7
-- Found libbrotlidec, version 1.0.7
-- Found Brotli: /usr/lib64/libbrotlicommon.so
-- Providing CMake module for Brotli
-- Found OpenSSL: /usr/lib64/libcrypto.so (found suitable version "1.0.2k", minimum required is "1.0.2")
-- Found OpenSSL Crypto Library: /usr/lib64/libcrypto.so
-- Building with OpenSSL (Version: 1.0.2k) support
-- Checking for module 'thrift'
-- No package 'thrift' found
-- Could NOT find Thrift: Found unsuitable version "", but required is at least "0.11.0" (found THRIFT_LIB-NOTFOUND)
-- Building Apache Thrift from source
-- Building jemalloc from source
-- Building (vendored) mimalloc from source
-- RapidJSON found. Headers: /usr/include
CMake Warning at cmake_modules/ThirdpartyToolchain.cmake:257 (find_package):
By not providing "Findxsimd.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "xsimd", but
CMake did not find one.
Could not find a package configuration file provided by "xsimd" (requested
version 8.1.0) with any of the following names:
xsimdConfig.cmake
xsimd-config.cmake
Add the installation prefix of "xsimd" to CMAKE_PREFIX_PATH or set
"xsimd_DIR" to a directory containing one of the above files. If "xsimd"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:2246 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Building xsimd from source
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7")
CMake Warning at cmake_modules/Findlz4Alt.cmake:25 (find_package):
By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "lz4", but
CMake did not find one.
Could not find a package configuration file provided by "lz4" with any of
the following names:
lz4Config.cmake
lz4-config.cmake
Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR"
to a directory containing one of the above files. If "lz4" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:257 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:2354 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Checking for module 'liblz4'
-- Found liblz4, version 1.8.3
-- Found lz4Alt: /usr/lib64/liblz4.so
-- Providing CMake module for lz4Alt
-- Checking for module 'libzstd'
-- Found libzstd, version 1.5.2
-- Found zstd: /usr/lib64/libzstd.so (Required is at least version "1.4.0")
-- Providing CMake module for zstd
CMake Warning at cmake_modules/Findre2Alt.cmake:25 (find_package):
By not providing "Findre2.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "re2", but
CMake did not find one.
Could not find a package configuration file provided by "re2" with any of
the following names:
re2Config.cmake
re2-config.cmake
Add the installation prefix of "re2" to CMAKE_PREFIX_PATH or set "re2_DIR"
to a directory containing one of the above files. If "re2" provides a
separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:257 (find_package)
cmake_modules/ThirdpartyToolchain.cmake:2483 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Checking for module 're2'
-- No package 're2' found
-- Could NOT find re2Alt (missing: RE2_LIB RE2_INCLUDE_DIR)
-- Building RE2 from source
-- Found BZip2: /usr/lib64/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Could NOT find utf8proc: Found unsuitable version "", but required is at least "2.2.0" (found utf8proc_LIB-NOTFOUND)
-- Building utf8proc from source
CMake Warning at cmake_modules/ThirdpartyToolchain.cmake:257 (find_package):
By not providing "Findnlohmann_json.cmake" in CMAKE_MODULE_PATH this
project has asked CMake to find a package configuration file provided by
"nlohmann_json", but CMake did not find one.
Could not find a package configuration file provided by "nlohmann_json"
with any of the following names:
nlohmann_jsonConfig.cmake
nlohmann_json-config.cmake
Add the installation prefix of "nlohmann_json" to CMAKE_PREFIX_PATH or set
"nlohmann_json_DIR" to a directory containing one of the above files. If
"nlohmann_json" provides a separate development package or SDK, be sure it
has been installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:4005 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Building nlohmann-json from source
-- Found nlohmann_json headers: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/nlohmann_json_ep-install/include
CMake Warning at cmake_modules/ThirdpartyToolchain.cmake:257 (find_package):
By not providing "Findgoogle_cloud_cpp_storage.cmake" in CMAKE_MODULE_PATH
this project has asked CMake to find a package configuration file provided
by "google_cloud_cpp_storage", but CMake did not find one.
Could not find a package configuration file provided by
"google_cloud_cpp_storage" with any of the following names:
google_cloud_cpp_storageConfig.cmake
google_cloud_cpp_storage-config.cmake
Add the installation prefix of "google_cloud_cpp_storage" to
CMAKE_PREFIX_PATH or set "google_cloud_cpp_storage_DIR" to a directory
containing one of the above files. If "google_cloud_cpp_storage" provides
a separate development package or SDK, be sure it has been installed.
Call Stack (most recent call first):
cmake_modules/ThirdpartyToolchain.cmake:4207 (resolve_dependency)
CMakeLists.txt:575 (include)
-- Building google-cloud-cpp from source
-- Only building the google-cloud-cpp::storage component
-- Building Abseil-cpp from source
-- Building crc32c from source
-- Found CURL: /usr/lib64/libcurl.so (found version "7.29.0")
-- Could NOT find Patch (missing: Patch_EXECUTABLE)
-- Found google-cloud-cpp::storage headers: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/google_cloud_cpp_ep-install/include
-- Found hdfs.h at: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/tools/cpp/thirdparty/hadoop/include/hdfs.h
-- Found AWS SDK for C++, Version: 1.9.343, Install Root:/usr/local, Platform Prefix:, Platform Dependent Libraries: pthread;crypto;ssl;z;curl
-- Components specified for AWSSDK: config;s3;transfer;identity-management;sts, application will be depending on libs: aws-cpp-sdk-config;aws-cpp-sdk-transfer;aws-cpp-sdk-identity-management;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-sts;aws-cpp-sdk-s3;aws-cpp-sdk-core
-- Try finding aws-cpp-sdk-core
-- Found crypto: /usr/lib64/libcrypto.so
-- LibCrypto Include Dir: /usr/include
-- LibCrypto Shared Lib: /usr/lib64/libcrypto.so
-- LibCrypto Static Lib: crypto_STATIC_LIBRARY-NOTFOUND
-- Found OpenSSL: /usr/lib64/libcrypto.so (found version "1.0.2k")
-- S2N found target: AWS::crypto
-- crypto Include Dir: /usr/include
-- S2N found target: AWS::crypto
-- crypto Include Dir: /usr/include
-- S2N found target: AWS::crypto
-- crypto Include Dir: /usr/include
-- S2N found target: AWS::crypto
-- crypto Include Dir: /usr/include
-- S2N found target: AWS::crypto
-- crypto Include Dir: /usr/include
-- S2N found target: AWS::crypto
-- crypto Include Dir: /usr/include
-- S2N found target: AWS::crypto
-- crypto Include Dir: /usr/include
-- S2N found target: AWS::crypto
-- crypto Include Dir: /usr/include
-- Found aws-cpp-sdk-core
-- Try finding aws-cpp-sdk-s3
-- Found aws-cpp-sdk-s3
-- Try finding aws-cpp-sdk-sts
-- Found aws-cpp-sdk-sts
-- Try finding aws-cpp-sdk-cognito-identity
-- Found aws-cpp-sdk-cognito-identity
-- Try finding aws-cpp-sdk-identity-management
-- Found aws-cpp-sdk-identity-management
-- Try finding aws-cpp-sdk-transfer
-- Found aws-cpp-sdk-transfer
-- Try finding aws-cpp-sdk-config
-- Found aws-cpp-sdk-config
-- Found AWS SDK headers: /usr/local/include
-- Found AWS SDK libraries: aws-cpp-sdk-config;aws-cpp-sdk-transfer;aws-cpp-sdk-identity-management;aws-cpp-sdk-cognito-identity;aws-cpp-sdk-sts;aws-cpp-sdk-s3;aws-cpp-sdk-core
-- All bundled static libraries: thrift::thrift;jemalloc;mimalloc::mimalloc;re2::re2;utf8proc::utf8proc;google-cloud-cpp::storage;google-cloud-cpp::rest-internal;google-cloud-cpp::common;absl::bad_optional_access;absl::bad_variant_access;absl::base;absl::civil_time;absl::int128;absl::log_severity;absl::raw_logging_internal;absl::spinlock_wait;absl::strings;absl::strings_internal;absl::str_format_internal;absl::throw_delegate;absl::time;absl::time_zone;Crc32c::crc32c
-- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
-- CMAKE_CXX_FLAGS: -Wno-noexcept-type -fdiagnostics-color=always -O3 -DNDEBUG -Wall -fno-semantic-interposition -msse4.2
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Creating bundled static library target arrow_bundled_dependencies at /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/release/libarrow_bundled_dependencies.a
-- ---------------------------------------------------------------------
-- Arrow version: 9.0.0
--
-- Build configuration summary:
-- Generator: Unix Makefiles
-- Build type: RELEASE
-- Source directory: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/tools/cpp
-- Install prefix: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0
--
-- Compile and link options:
--
-- ARROW_CXXFLAGS="" [default=""]
-- Compiler flags to append when compiling Arrow
-- ARROW_BUILD_STATIC=ON [default=ON]
-- Build static libraries
-- ARROW_BUILD_SHARED=OFF [default=ON]
-- Build shared libraries
-- ARROW_PACKAGE_KIND="" [default=""]
-- Arbitrary string that identifies the kind of package
-- (for informational purposes)
-- ARROW_GIT_ID="" [default=""]
-- The Arrow git commit id (if any)
-- ARROW_GIT_DESCRIPTION="" [default=""]
-- The Arrow git commit description (if any)
-- ARROW_NO_DEPRECATED_API=OFF [default=OFF]
-- Exclude deprecated APIs from build
-- ARROW_POSITION_INDEPENDENT_CODE=ON [default=ON]
-- Whether to create position-independent target
-- ARROW_USE_CCACHE=ON [default=ON]
-- Use ccache when compiling (if available)
-- ARROW_USE_LD_GOLD=OFF [default=OFF]
-- Use ld.gold for linking on Linux (if available)
-- ARROW_USE_PRECOMPILED_HEADERS=OFF [default=OFF]
-- Use precompiled headers when compiling
-- ARROW_SIMD_LEVEL=SSE4_2 [default=NONE|SSE4_2|AVX2|AVX512|NEON|DEFAULT]
-- Compile-time SIMD optimization level
-- ARROW_RUNTIME_SIMD_LEVEL=MAX [default=NONE|SSE4_2|AVX2|AVX512|MAX]
-- Max runtime SIMD optimization level
-- ARROW_ARMV8_ARCH=armv8-a [default=armv8-a|armv8-a+crc+crypto]
-- Arm64 arch and extensions
-- ARROW_ALTIVEC=ON [default=ON]
-- Build with Altivec if compiler has support
-- ARROW_RPATH_ORIGIN=OFF [default=OFF]
-- Build Arrow libraries with RATH set to $ORIGIN
-- ARROW_INSTALL_NAME_RPATH=ON [default=ON]
-- Build Arrow libraries with install_name set to @rpath
-- ARROW_GGDB_DEBUG=ON [default=ON]
-- Pass -ggdb flag to debug builds
--
-- Test and benchmark options:
--
-- ARROW_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Arrow examples
-- ARROW_BUILD_TESTS=OFF [default=OFF]
-- Build the Arrow googletest unit tests
-- ARROW_ENABLE_TIMING_TESTS=ON [default=ON]
-- Enable timing-sensitive tests
-- ARROW_BUILD_INTEGRATION=OFF [default=OFF]
-- Build the Arrow integration test executables
-- ARROW_BUILD_BENCHMARKS=OFF [default=OFF]
-- Build the Arrow micro benchmarks
-- ARROW_BUILD_BENCHMARKS_REFERENCE=OFF [default=OFF]
-- Build the Arrow micro reference benchmarks
-- ARROW_BUILD_OPENMP_BENCHMARKS=OFF [default=OFF]
-- Build the Arrow benchmarks that rely on OpenMP
-- ARROW_BUILD_DETAILED_BENCHMARKS=OFF [default=OFF]
-- Build benchmarks that do a longer exploration of performance
-- ARROW_TEST_LINKAGE=static [default=shared|static]
-- Linkage of Arrow libraries with unit tests executables.
-- ARROW_FUZZING=OFF [default=OFF]
-- Build Arrow Fuzzing executables
-- ARROW_LARGE_MEMORY_TESTS=OFF [default=OFF]
-- Enable unit tests which use large memory
--
-- Lint options:
--
-- ARROW_ONLY_LINT=OFF [default=OFF]
-- Only define the lint and check-format targets
-- ARROW_VERBOSE_LINT=OFF [default=OFF]
-- If off, 'quiet' flags will be passed to linting tools
-- ARROW_GENERATE_COVERAGE=OFF [default=OFF]
-- Build with C++ code coverage enabled
--
-- Checks options:
--
-- ARROW_TEST_MEMCHECK=OFF [default=OFF]
-- Run the test suite using valgrind --tool=memcheck
-- ARROW_USE_ASAN=OFF [default=OFF]
-- Enable Address Sanitizer checks
-- ARROW_USE_TSAN=OFF [default=OFF]
-- Enable Thread Sanitizer checks
-- ARROW_USE_UBSAN=OFF [default=OFF]
-- Enable Undefined Behavior sanitizer checks
--
-- Project component options:
--
-- ARROW_BUILD_UTILITIES=OFF [default=OFF]
-- Build Arrow commandline utilities
-- ARROW_COMPUTE=ON [default=OFF]
-- Build the Arrow Compute Modules
-- ARROW_CSV=ON [default=OFF]
-- Build the Arrow CSV Parser Module
-- ARROW_CUDA=OFF [default=OFF]
-- Build the Arrow CUDA extensions (requires CUDA toolkit)
-- ARROW_DATASET=ON [default=OFF]
-- Build the Arrow Dataset Modules
-- ARROW_SUBSTRAIT=OFF [default=OFF]
-- Build the Arrow Substrait Consumer Module
-- ARROW_FILESYSTEM=ON [default=OFF]
-- Build the Arrow Filesystem Layer
-- ARROW_FLIGHT=OFF [default=OFF]
-- Build the Arrow Flight RPC System (requires GRPC, Protocol Buffers)
-- ARROW_FLIGHT_SQL=OFF [default=OFF]
-- Build the Arrow Flight SQL extension
-- ARROW_GANDIVA=OFF [default=OFF]
-- Build the Gandiva libraries
-- ARROW_GCS=ON [default=OFF]
-- Build Arrow with GCS support (requires the GCloud SDK for C++)
-- ARROW_HDFS=OFF [default=OFF]
-- Build the Arrow HDFS bridge
-- ARROW_IPC=ON [default=ON]
-- Build the Arrow IPC extensions
-- ARROW_JEMALLOC=ON [default=ON]
-- Build the Arrow jemalloc-based allocator
-- ARROW_JNI=OFF [default=OFF]
-- Build the Arrow JNI lib
-- ARROW_JSON=ON [default=OFF]
-- Build Arrow with JSON support (requires RapidJSON)
-- ARROW_MIMALLOC=ON [default=OFF]
-- Build the Arrow mimalloc-based allocator
-- ARROW_PARQUET=ON [default=OFF]
-- Build the Parquet libraries
-- ARROW_ORC=OFF [default=OFF]
-- Build the Arrow ORC adapter
-- ARROW_PLASMA=OFF [default=OFF]
-- Build the plasma object store along with Arrow
-- ARROW_PLASMA_JAVA_CLIENT=OFF [default=OFF]
-- Build the plasma object store java client
-- ARROW_PYTHON=OFF [default=OFF]
-- Build the Arrow CPython extensions
-- ARROW_S3=ON [default=OFF]
-- Build Arrow with S3 support (requires the AWS SDK for C++)
-- ARROW_SKYHOOK=OFF [default=OFF]
-- Build the Skyhook libraries
-- ARROW_TENSORFLOW=OFF [default=OFF]
-- Build Arrow with TensorFlow support enabled
-- ARROW_TESTING=OFF [default=OFF]
-- Build the Arrow testing libraries
--
-- Thirdparty toolchain options:
--
-- ARROW_DEPENDENCY_SOURCE=AUTO [default=AUTO|BUNDLED|SYSTEM|CONDA|VCPKG|BREW]
-- Method to use for acquiring arrow's build dependencies
-- ARROW_VERBOSE_THIRDPARTY_BUILD=OFF [default=OFF]
-- Show output from ExternalProjects rather than just logging to files
-- ARROW_DEPENDENCY_USE_SHARED=ON [default=ON]
-- Link to shared libraries
-- ARROW_BOOST_USE_SHARED=OFF [default=ON]
-- Rely on Boost shared libraries where relevant
-- ARROW_BROTLI_USE_SHARED=ON [default=ON]
-- Rely on Brotli shared libraries where relevant
-- ARROW_BZ2_USE_SHARED=ON [default=ON]
-- Rely on Bz2 shared libraries where relevant
-- ARROW_GFLAGS_USE_SHARED=ON [default=ON]
-- Rely on GFlags shared libraries where relevant
-- ARROW_GRPC_USE_SHARED=ON [default=ON]
-- Rely on gRPC shared libraries where relevant
-- ARROW_JEMALLOC_USE_SHARED=OFF [default=ON]
-- Rely on jemalloc shared libraries where relevant
-- ARROW_LZ4_USE_SHARED=ON [default=ON]
-- Rely on lz4 shared libraries where relevant
-- ARROW_OPENSSL_USE_SHARED=ON [default=ON]
-- Rely on OpenSSL shared libraries where relevant
-- ARROW_PROTOBUF_USE_SHARED=ON [default=ON]
-- Rely on Protocol Buffers shared libraries where relevant
-- ARROW_SNAPPY_USE_SHARED=ON [default=ON]
-- Rely on snappy shared libraries where relevant
-- ARROW_THRIFT_USE_SHARED=ON [default=ON]
-- Rely on thrift shared libraries where relevant
-- ARROW_UTF8PROC_USE_SHARED=ON [default=ON]
-- Rely on utf8proc shared libraries where relevant
-- ARROW_ZSTD_USE_SHARED=ON [default=ON]
-- Rely on zstd shared libraries where relevant
-- ARROW_USE_GLOG=OFF [default=OFF]
-- Build libraries with glog support for pluggable logging
-- ARROW_WITH_BACKTRACE=ON [default=ON]
-- Build with backtrace support
-- ARROW_WITH_OPENTELEMETRY=OFF [default=OFF]
-- Build libraries with OpenTelemetry support for distributed tracing
-- ARROW_WITH_BROTLI=ON [default=OFF]
-- Build with Brotli compression
-- ARROW_WITH_BZ2=ON [default=OFF]
-- Build with BZ2 compression
-- ARROW_WITH_LZ4=ON [default=OFF]
-- Build with lz4 compression
-- ARROW_WITH_SNAPPY=ON [default=OFF]
-- Build with Snappy compression
-- ARROW_WITH_ZLIB=ON [default=OFF]
-- Build with zlib compression
-- ARROW_WITH_ZSTD=ON [default=OFF]
-- Build with zstd compression
-- ARROW_WITH_UCX=OFF [default=OFF]
-- Build with UCX transport for Arrow Flight
-- (only used if ARROW_FLIGHT is ON)
-- ARROW_WITH_UTF8PROC=ON [default=ON]
-- Build with support for Unicode properties using the utf8proc library
-- (only used if ARROW_COMPUTE is ON or ARROW_GANDIVA is ON)
-- ARROW_WITH_RE2=ON [default=ON]
-- Build with support for regular expressions using the re2 library
-- (only used if ARROW_COMPUTE or ARROW_GANDIVA is ON)
--
-- Parquet options:
--
-- PARQUET_MINIMAL_DEPENDENCY=OFF [default=OFF]
-- Depend only on Thirdparty headers to build libparquet.
-- Always OFF if building binaries
-- PARQUET_BUILD_EXECUTABLES=OFF [default=OFF]
-- Build the Parquet executable CLI tools. Requires static libraries to be built.
-- PARQUET_BUILD_EXAMPLES=OFF [default=OFF]
-- Build the Parquet examples. Requires static libraries to be built.
-- PARQUET_REQUIRE_ENCRYPTION=OFF [default=OFF]
-- Build support for encryption. Fail if OpenSSL is not found
--
-- Gandiva options:
--
-- ARROW_GANDIVA_JAVA=OFF [default=OFF]
-- Build the Gandiva JNI wrappers
-- ARROW_GANDIVA_STATIC_LIBSTDCPP=OFF [default=OFF]
-- Include -static-libstdc++ -static-libgcc when linking with
-- Gandiva static libraries
-- ARROW_GANDIVA_PC_CXX_FLAGS="" [default=""]
-- Compiler flags to append when pre-compiling Gandiva operations
--
-- Advanced developer options:
--
-- ARROW_EXTRA_ERROR_CONTEXT=OFF [default=OFF]
-- Compile with extra error context (line numbers, code)
-- ARROW_OPTIONAL_INSTALL=OFF [default=OFF]
-- If enabled install ONLY targets that have already been built. Please be
-- advised that if this is enabled 'install' will fail silently on components
-- that have not been built
-- Outputting build configuration summary to /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/cmake_summary.json
-- Configuring done
-- Generating done
-- Build files have been written to: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae
+ /usr/local/cmake-3.21.4-linux-x86_64/bin/cmake --build . --target install
[ 0%] Creating directories for 'jemalloc_ep'
[ 1%] Creating directories for 'boost_ep'
[ 2%] Performing download step (download, verify and extract) for 'jemalloc_ep'
[ 2%] Performing download step (download, verify and extract) for 'boost_ep'
-- jemalloc_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-download-*.log
[ 3%] No update step for 'jemalloc_ep'
[ 3%] Performing patch step for 'jemalloc_ep'
[ 3%] Performing configure step for 'jemalloc_ep'
-- jemalloc_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-configure-*.log
[ 3%] Performing build step for 'jemalloc_ep'
-- boost_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/boost_ep-prefix/src/boost_ep-stamp/boost_ep-download-*.log
[ 3%] No update step for 'boost_ep'
[ 3%] No patch step for 'boost_ep'
[ 3%] No configure step for 'boost_ep'
[ 4%] No build step for 'boost_ep'
[ 4%] No install step for 'boost_ep'
[ 4%] Completed 'boost_ep'
[ 4%] Built target boost_ep
[ 4%] Creating directories for 'crc32c_ep'
[ 4%] Performing download step (download, verify and extract) for 'crc32c_ep'
-- crc32c_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/crc32c_ep-prefix/src/crc32c_ep-stamp/crc32c_ep-download-*.log
[ 4%] No update step for 'crc32c_ep'
[ 4%] No patch step for 'crc32c_ep'
[ 4%] Performing configure step for 'crc32c_ep'
-- crc32c_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/crc32c_ep-prefix/src/crc32c_ep-stamp/crc32c_ep-configure-*.log
[ 4%] Performing build step for 'crc32c_ep'
-- crc32c_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/crc32c_ep-prefix/src/crc32c_ep-stamp/crc32c_ep-build-*.log
[ 5%] Performing install step for 'crc32c_ep'
-- crc32c_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/crc32c_ep-prefix/src/crc32c_ep-stamp/crc32c_ep-install-*.log
[ 6%] Completed 'crc32c_ep'
[ 6%] Built target crc32c_ep
[ 6%] Creating directories for 'nlohmann_json_ep'
[ 6%] Performing download step (download, verify and extract) for 'nlohmann_json_ep'
-- nlohmann_json_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/nlohmann_json_ep-prefix/src/nlohmann_json_ep-stamp/nlohmann_json_ep-download-*.log
[ 6%] No update step for 'nlohmann_json_ep'
[ 7%] No patch step for 'nlohmann_json_ep'
[ 8%] Performing configure step for 'nlohmann_json_ep'
-- nlohmann_json_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/nlohmann_json_ep-prefix/src/nlohmann_json_ep-stamp/nlohmann_json_ep-configure-*.log
[ 8%] Performing build step for 'nlohmann_json_ep'
-- nlohmann_json_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/nlohmann_json_ep-prefix/src/nlohmann_json_ep-stamp/nlohmann_json_ep-build-*.log
[ 8%] Performing install step for 'nlohmann_json_ep'
-- nlohmann_json_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/nlohmann_json_ep-prefix/src/nlohmann_json_ep-stamp/nlohmann_json_ep-install-*.log
[ 8%] Completed 'nlohmann_json_ep'
[ 8%] Built target nlohmann_json_ep
[ 8%] Creating directories for 'mimalloc_ep'
[ 9%] Performing download step (download, verify and extract) for 'mimalloc_ep'
-- Downloading...
dst='/apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep-prefix/src/v2.0.6.tar.gz'
timeout='none'
inactivity timeout='none'
-- Using src='https://github.com/microsoft/mimalloc/archive/v2.0.6.tar.gz'
-- verifying file...
file='/apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep-prefix/src/v2.0.6.tar.gz'
-- Downloading... done
-- extracting...
src='/apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep-prefix/src/v2.0.6.tar.gz'
dst='/apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep-prefix/src/mimalloc_ep'
-- extracting... [tar xfz]
-- extracting... [analysis]
-- extracting... [rename]
-- extracting... [clean up]
-- extracting... done
[ 10%] No update step for 'mimalloc_ep'
[ 10%] No patch step for 'mimalloc_ep'
[ 10%] Performing configure step for 'mimalloc_ep'
-- The C compiler identification is GNU 8.3.1
-- The CXX compiler identification is GNU 8.3.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /opt/rh/devtoolset-8/root/usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /opt/rh/devtoolset-8/root/usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
--
--
-- Library base name: mimalloc
-- Version : 2.0
-- Build type : release
-- C Compiler : /opt/rh/devtoolset-8/root/usr/bin/gcc
-- Compiler flags : -Wall;-Wextra;-Wno-unknown-pragmas;-fvisibility=hidden;-Wstrict-prototypes;-ftls-model=local-dynamic
-- Compiler defines :
-- Link libraries : /usr/lib64/libpthread.so;/usr/lib64/librt.so
-- Build targets : static
--
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
-- Build files have been written to: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep-prefix/src/mimalloc_ep-build
[ 10%] Performing build step for 'mimalloc_ep'
[ 6%] Building C object CMakeFiles/mimalloc-static.dir/src/stats.c.o
[ 13%] Building C object CMakeFiles/mimalloc-static.dir/src/random.c.o
[ 20%] Building C object CMakeFiles/mimalloc-static.dir/src/os.c.o
[ 26%] Building C object CMakeFiles/mimalloc-static.dir/src/bitmap.c.o
[ 33%] Building C object CMakeFiles/mimalloc-static.dir/src/arena.c.o
[ 40%] Building C object CMakeFiles/mimalloc-static.dir/src/segment-cache.c.o
[ 46%] Building C object CMakeFiles/mimalloc-static.dir/src/segment.c.o
[ 53%] Building C object CMakeFiles/mimalloc-static.dir/src/page.c.o
[ 60%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc.c.o
[ 66%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-aligned.c.o
[ 73%] Building C object CMakeFiles/mimalloc-static.dir/src/alloc-posix.c.o
[ 80%] Building C object CMakeFiles/mimalloc-static.dir/src/heap.c.o
[ 86%] Building C object CMakeFiles/mimalloc-static.dir/src/options.c.o
[ 93%] Building C object CMakeFiles/mimalloc-static.dir/src/init.c.o
[100%] Linking C static library libmimalloc.a
[100%] Built target mimalloc-static
[ 10%] Performing install step for 'mimalloc_ep'
Consolidate compiler generated dependencies of target mimalloc-static
[100%] Built target mimalloc-static
Install the project...
-- Install configuration: "RELEASE"
-- Installing: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep/src/mimalloc_ep/lib/mimalloc-2.0/libmimalloc.a
-- Installing: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep/src/mimalloc_ep/lib/cmake/mimalloc-2.0/mimalloc.cmake
-- Installing: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep/src/mimalloc_ep/lib/cmake/mimalloc-2.0/mimalloc-release.cmake
-- Installing: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep/src/mimalloc_ep/include/mimalloc-2.0/mimalloc.h
-- Installing: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep/src/mimalloc_ep/include/mimalloc-2.0/mimalloc-override.h
-- Installing: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep/src/mimalloc_ep/include/mimalloc-2.0/mimalloc-new-delete.h
-- Installing: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep/src/mimalloc_ep/lib/cmake/mimalloc-2.0/mimalloc-config.cmake
-- Installing: /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/mimalloc_ep/src/mimalloc_ep/lib/cmake/mimalloc-2.0/mimalloc-config-version.cmake
[ 10%] Completed 'mimalloc_ep'
[ 10%] Built target mimalloc_ep
[ 10%] Creating directories for 'xsimd_ep'
[ 10%] Performing download step (download, verify and extract) for 'xsimd_ep'
-- xsimd_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/src/xsimd_ep-stamp/xsimd_ep-download-*.log
[ 11%] No update step for 'xsimd_ep'
[ 11%] No patch step for 'xsimd_ep'
[ 11%] Performing configure step for 'xsimd_ep'
-- xsimd_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/src/xsimd_ep-stamp/xsimd_ep-configure-*.log
[ 11%] Performing build step for 'xsimd_ep'
-- xsimd_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/src/xsimd_ep-stamp/xsimd_ep-build-*.log
[ 12%] Performing install step for 'xsimd_ep'
-- xsimd_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/src/xsimd_ep-stamp/xsimd_ep-install-*.log
[ 13%] Completed 'xsimd_ep'
[ 13%] Built target xsimd_ep
[ 14%] Creating directories for 're2_ep'
[ 14%] Performing download step (download, verify and extract) for 're2_ep'
-- re2_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/re2_ep-prefix/src/re2_ep-stamp/re2_ep-download-*.log
[ 14%] No update step for 're2_ep'
[ 14%] No patch step for 're2_ep'
[ 14%] Performing configure step for 're2_ep'
-- re2_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/re2_ep-prefix/src/re2_ep-stamp/re2_ep-configure-*.log
[ 15%] Performing build step for 're2_ep'
-- re2_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log
[ 15%] Performing install step for 're2_ep'
-- re2_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log
[ 15%] Completed 're2_ep'
[ 15%] Built target re2_ep
[ 15%] Creating directories for 'utf8proc_ep'
[ 15%] Performing download step (download, verify and extract) for 'utf8proc_ep'
-- utf8proc_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-download-*.log
[ 15%] No update step for 'utf8proc_ep'
[ 15%] No patch step for 'utf8proc_ep'
[ 15%] Performing configure step for 'utf8proc_ep'
-- utf8proc_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-configure-*.log
[ 15%] Performing build step for 'utf8proc_ep'
-- utf8proc_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-build-*.log
[ 16%] Performing install step for 'utf8proc_ep'
-- utf8proc_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/utf8proc_ep-prefix/src/utf8proc_ep-stamp/utf8proc_ep-install-*.log
[ 17%] Completed 'utf8proc_ep'
[ 17%] Built target utf8proc_ep
[ 17%] Creating directories for 'absl_ep'
[ 18%] Performing download step (download, verify and extract) for 'absl_ep'
-- absl_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/absl_ep-prefix/src/absl_ep-stamp/absl_ep-download-*.log
[ 19%] No update step for 'absl_ep'
[ 19%] No patch step for 'absl_ep'
[ 19%] Performing configure step for 'absl_ep'
-- absl_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/absl_ep-prefix/src/absl_ep-stamp/absl_ep-configure-*.log
[ 19%] Performing build step for 'absl_ep'
-- jemalloc_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
[ 19%] Performing install step for 'jemalloc_ep'
-- jemalloc_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
[ 20%] Completed 'jemalloc_ep'
[ 20%] Built target jemalloc_ep
[ 21%] Creating directories for 'thrift_ep'
[ 21%] Performing download step (download, verify and extract) for 'thrift_ep'
-- thrift_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-download-*.log
[ 21%] No update step for 'thrift_ep'
[ 21%] No patch step for 'thrift_ep'
[ 21%] Performing configure step for 'thrift_ep'
-- thrift_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-configure-*.log
[ 22%] Performing build step for 'thrift_ep'
-- thrift_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-*.log
[ 22%] Performing install step for 'thrift_ep'
-- thrift_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-install-*.log
[ 22%] Completed 'thrift_ep'
[ 22%] Built target thrift_ep
-- absl_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/absl_ep-prefix/src/absl_ep-stamp/absl_ep-build-*.log
[ 22%] Performing install step for 'absl_ep'
-- absl_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/absl_ep-prefix/src/absl_ep-stamp/absl_ep-install-*.log
[ 22%] Completed 'absl_ep'
[ 22%] Built target absl_ep
[ 22%] Built target google_cloud_cpp_dependencies
[ 22%] Creating directories for 'google_cloud_cpp_ep'
[ 22%] Performing download step (download, verify and extract) for 'google_cloud_cpp_ep'
-- google_cloud_cpp_ep download command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/google_cloud_cpp_ep-prefix/src/google_cloud_cpp_ep-stamp/google_cloud_cpp_ep-download-*.log
[ 22%] No update step for 'google_cloud_cpp_ep'
[ 22%] No patch step for 'google_cloud_cpp_ep'
[ 22%] Performing configure step for 'google_cloud_cpp_ep'
-- google_cloud_cpp_ep configure command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/google_cloud_cpp_ep-prefix/src/google_cloud_cpp_ep-stamp/google_cloud_cpp_ep-configure-*.log
[ 22%] Performing build step for 'google_cloud_cpp_ep'
-- google_cloud_cpp_ep build command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/google_cloud_cpp_ep-prefix/src/google_cloud_cpp_ep-stamp/google_cloud_cpp_ep-build-*.log
[ 23%] Performing install step for 'google_cloud_cpp_ep'
-- google_cloud_cpp_ep install command succeeded. See also /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/google_cloud_cpp_ep-prefix/src/google_cloud_cpp_ep-stamp/google_cloud_cpp_ep-install-*.log
[ 24%] Completed 'google_cloud_cpp_ep'
[ 24%] Built target google_cloud_cpp_ep
[ 24%] Bundling /apps/tmp/Rtmp3L3ua5/file36c3b0ea3ae/release/libarrow_bundled_dependencies.a
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[ 24%] Built target arrow_dependencies
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Install the project...
-- Install configuration: "RELEASE"
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/FindSnappyAlt.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/FindBrotli.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/Findlz4Alt.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/Findzstd.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/util/config.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/share/doc/arrow/LICENSE.txt
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/share/doc/arrow/NOTICE.txt
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/share/doc/arrow/README.md
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/share/arrow/gdb/gdb_arrow.py
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/libarrow.a
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/FindArrow.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/ArrowTargets.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/ArrowTargets-release.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/ArrowConfig.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/cmake/arrow/ArrowConfigVersion.cmake
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/pkgconfig/arrow.pc
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib/libarrow_bundled_dependencies.a
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/api.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/array.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/buffer.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/buffer_builder.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/builder.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/chunk_resolver.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/chunked_array.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/compare.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/config.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/datum.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/device.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/extension_type.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/memory_pool.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/memory_pool_test.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/pch.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/pretty_print.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/record_batch.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/result.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/scalar.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/sparse_tensor.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/status.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/stl.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/stl_allocator.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/stl_iterator.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/table.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/table_builder.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/tensor.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/type.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/type_fwd.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/type_traits.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/arrow/visit_array_inline.h
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-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/file_writer.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/hasher.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/level_comparison.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/level_comparison_inc.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/level_conversion.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/level_conversion_inc.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/metadata.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/murmur3.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/pch.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/platform.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/printer.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/properties.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/schema.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/statistics.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/stream_reader.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/stream_writer.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/test_util.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/type_fwd.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/types.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/windows_compatibility.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/windows_fixup.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/parquet_version.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/api/io.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/api/reader.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/api/schema.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/api/writer.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/arrow/reader.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/arrow/schema.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/arrow/test_util.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/arrow/writer.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/crypto_factory.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/encryption.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/file_key_material_store.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/file_key_unwrapper.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/file_key_wrapper.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/key_encryption_key.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/key_material.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/key_metadata.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/key_toolkit.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/kms_client.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/kms_client_factory.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/local_wrap_kms_client.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/test_encryption_util.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/test_in_memory_kms.h
-- Installing: /apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include/parquet/encryption/two_level_cache_with_expiration.h
+ popd
/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow
PKG_CFLAGS=-I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS
PKG_LIBS=-L/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib -larrow_dataset -lparquet -larrow -larrow_bundled_dependencies -lbrotlidec -lbrotlienc -lz -llz4 -lzstd -lbrotlicommon /usr/lib64/libsnappy.so /usr/lib64/libbz2.so -pthread -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -lssl -lcrypto -lcurl -lssl -lcrypto -lcurl
** libs
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c RTasks.cpp -o RTasks.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c altrep.cpp -o altrep.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c array.cpp -o array.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c array_to_vector.cpp -o array_to_vector.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c arraydata.cpp -o arraydata.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c arrowExports.cpp -o arrowExports.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c bridge.cpp -o bridge.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c buffer.cpp -o buffer.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c chunkedarray.cpp -o chunkedarray.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c compression.cpp -o compression.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c compute-exec.cpp -o compute-exec.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c compute.cpp -o compute.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c config.cpp -o config.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c csv.cpp -o csv.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c dataset.cpp -o dataset.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c datatype.cpp -o datatype.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c expression.cpp -o expression.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c extension-impl.cpp -o extension-impl.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c feather.cpp -o feather.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c field.cpp -o field.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c filesystem.cpp -o filesystem.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c io.cpp -o io.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c json.cpp -o json.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c memorypool.cpp -o memorypool.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c message.cpp -o message.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c parquet.cpp -o parquet.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c r_to_arrow.cpp -o r_to_arrow.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatch.cpp -o recordbatch.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatchreader.cpp -o recordbatchreader.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c recordbatchwriter.cpp -o recordbatchwriter.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c safe-call-into-r-impl.cpp -o safe-call-into-r-impl.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c scalar.cpp -o scalar.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c schema.cpp -o schema.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c symbols.cpp -o symbols.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c table.cpp -o table.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c threadpool.cpp -o threadpool.o
g++ -std=gnu++11 -I"/opt/R/4.1.3/lib/R/include" -DNDEBUG -I/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/include -DARROW_R_WITH_PARQUET -DARROW_R_WITH_DATASET -DARROW_R_WITH_JSON -DARROW_R_WITH_S3 -DARROW_R_WITH_GCS -I'/apps/R/4.1.3/lib/R/library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c type_infer.cpp -o type_infer.o
g++ -std=gnu++11 -shared -L/opt/R/4.1.3/lib/R/lib -L/usr/local/lib -o arrow.so RTasks.o altrep.o array.o array_to_vector.o arraydata.o arrowExports.o bridge.o buffer.o chunkedarray.o compression.o compute-exec.o compute.o config.o csv.o dataset.o datatype.o expression.o extension-impl.o feather.o field.o filesystem.o imports.o io.o json.o memorypool.o message.o parquet.o r_to_arrow.o recordbatch.o recordbatchreader.o recordbatchwriter.o safe-call-into-r-impl.o scalar.o schema.o symbols.o table.o threadpool.o type_infer.o -L/apps/tmp/Rtmpt2biGN/R.INSTALL369b230257a8/arrow/libarrow/arrow-9.0.0/lib -larrow_dataset -lparquet -larrow -larrow_bundled_dependencies -lbrotlidec -lbrotlienc -lz -llz4 -lzstd -lbrotlicommon /usr/lib64/libsnappy.so /usr/lib64/libbz2.so -pthread -larrow -larrow_bundled_dependencies -larrow_dataset -lparquet -lssl -lcrypto -lcurl -lssl -lcrypto -lcurl -L/opt/R/4.1.3/lib/R/lib -lR
installing to ~/user1/R/x86_64-pc-linux-gnu-library/4.1.3/00LOCK-arrow/00new/arrow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘arrow’
finding HTML links ... done
ArrayData html
ChunkedArray html
Codec html
CsvReadOptions html
CsvTableReader html
DataType html
Dataset html
DictionaryType html
Expression html
ExtensionArray html
ExtensionType html
FeatherReader html
Field html
FileFormat html
FileInfo html
FileSelector html
FileSystem html
FileWriteOptions html
FixedWidthType html
FragmentScanOptions html
InputStream html
MemoryPool html
Message html
MessageReader html
OutputStream html
ParquetArrowReaderProperties html
ParquetFileReader html
ParquetFileWriter html
ParquetWriterProperties html
Partitioning html
RecordBatch html
RecordBatchReader html
RecordBatchWriter html
Scalar html
Scanner html
Schema html
Table html
array html
arrow-package html
arrow_info html
as_arrow_array html
as_arrow_table html
as_chunked_array html
as_data_type html
as_record_batch html
as_record_batch_reader html
as_schema html
buffer html
call_function html
cast_options html
codec_is_available html
compression html
concat_arrays html
concat_tables html
contains_regex html
copy_files html
cpu_count html
create_package_with_all_dependencies html
data-type html
dataset_factory html
default_memory_pool html
dictionary html
enums html
flight_connect html
flight_disconnect html
flight_get html
flight_put html
get_stringr_pattern_options html
gs_bucket html
hive_partition html
infer_type html
install_arrow html
install_pyarrow html
io_thread_count html
list_compute_functions html
list_flights html
load_flight_server html
make_readable_file html
map_batches html
match_arrow html
mmap_create html
mmap_open html
new_extension_type html
open_dataset html
read_delim_arrow html
read_feather html
read_ipc_stream html
read_json_arrow html
read_message html
read_parquet html
read_schema html
recycle_scalars html
reexports html
register_binding html
register_scalar_function html
repeat_value_as_array html
s3_bucket html
show_exec_plan html
to_arrow html
to_duckdb html
unify_schemas html
value_counts html
vctrs_extension_array html
write_arrow html
write_csv_arrow html
write_dataset html
write_feather html
write_ipc_stream html
write_parquet html
write_to_raw html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '~/user1/R/x86_64-pc-linux-gnu-library/4.1.3/00LOCK-arrow/00new/arrow/libs/arrow.so':
~/user1/R/x86_64-pc-linux-gnu-library/4.1.3/00LOCK-arrow/00new/arrow/libs/arrow.so: undefined symbol: _ZTIN3Aws4Auth22AWSCredentialsProviderE
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘~/user1/R/x86_64-pc-linux-gnu-library/4.1.3/arrow’
Warning message:
In install.packages(mpkg, repos = NULL, type = "source") :
installation of package ‘/apps/tmp/Rtmpgy5p4d/downloaded_packages/arrow_9.0.0.tar.gz’ had non-zero exit status
>
Kouhei Sutou / @kou: It seems that this build uses the system AWS SDK C++ not bundled AWS SDK C++. I think that we need to add AWS SDK C++ related link flags for this case in https://github.com/apache/arrow/blob/master/r/configure#L259 .
@thisisnic Could you try this with system AWS SDK C++?
Nicola Crane / @thisisnic: @kou Sorry, I'm not totally sure what you mean, can you expand on "try this with system AWS SDK C++" - try what?
Kouhei Sutou / @kou:
[~wtacct77]
How did you install AWS SDK C++?)Wayne Tu: This was how I built AWS SDK C++ from source:
git clone --recurse-submodules https://github.com/aws/aws-sdk-cpp mkdir mybuild cd mybuild cmake .. -DCMAKE_BUILD_TYPE=Debug -DCMAKE_PREFIX_PATH=/usr/local/aws-sdk-cpp-1.9.341 make make install
Nicola Crane / @thisisnic:
Having issues trying this locally as I keep running out of disk space. Is it worth me trying with just the aws-cpp-sdk-s3
directory, or is it likely to have other dependencies here?
Wayne Tu: According to my experience, it's required ~14GB (or ~14003000KB) space for the aws-sdk-cpp build. The directory size continuously grew when running the build until the above size was reached.
Neal Richardson / @nealrichardson: You don't need all of aws-sdk-cpp but it is complicated to enumerate all of the things you do need. We have that sorted out in arrow's cmake in the bundled build, is there a reason you need to build it separately?
Kouhei Sutou / @kou: It seems that this problem is occurred when we use system AWS SDK C\. So we can't use bundled AWS SDK C\ to reproduce this problem.
Nicola Crane / @thisisnic: Managed to clear up some space and replicate the problem locally. Just trying to work out how to:
"2. Add missing AWS SDK C++ related libraries to https://github.com/apache/arrow/blob/master/r/configure#L259 to resolve the link error: "undefined symbol: _ZTIN3Aws4Auth22AWSCredentialsProviderE""
I'm not sure what the new -l
flag should be or how I even find out that information.
Kouhei Sutou / @kou:
Could you show AWS SDK C\'s lib*
list on your environment?
You can find then under $AWS_SDK_CPP_PREFIX/lib/
where AWS_SDK_CPP_PREFIX
is the value you specified to -DCMAKE_INSTALL_PREFIX
when you built AWS SDK C\. If you didn't specify -DCMAKE_INSTALL_PREFIX
, AWS_SDK_CPP_PREFIX
is /usr/local
.
Nicola Crane / @thisisnic: Thanks @kou - here it is:
ls | grep aws
aws-c-auth
aws-c-cal
aws-c-common
aws-c-compression
aws-c-event-stream
aws-checksums
aws-c-http
aws-c-io
aws-c-mqtt
aws-crt-cpp
aws-c-s3
aws-c-sdkutils
libaws-c-auth.a
libaws-c-cal.a
libaws-c-common.a
libaws-c-compression.a
libaws-c-event-stream.a
libaws-checksums.a
libaws-c-http.a
libaws-c-io.a
libaws-c-mqtt.a
libaws-cpp-sdk-accessanalyzer.so
libaws-cpp-sdk-access-management.so
libaws-cpp-sdk-account.so
libaws-cpp-sdk-acm-pca.so
libaws-cpp-sdk-acm.so
libaws-cpp-sdk-alexaforbusiness.so
libaws-cpp-sdk-amplifybackend.so
libaws-cpp-sdk-amplify.so
libaws-cpp-sdk-amplifyuibuilder.so
libaws-cpp-sdk-amp.so
libaws-cpp-sdk-apigatewaymanagementapi.so
libaws-cpp-sdk-apigateway.so
libaws-cpp-sdk-apigatewayv2.so
libaws-cpp-sdk-appconfigdata.so
libaws-cpp-sdk-appconfig.so
libaws-cpp-sdk-appflow.so
libaws-cpp-sdk-appintegrations.so
libaws-cpp-sdk-application-autoscaling.so
libaws-cpp-sdk-applicationcostprofiler.so
libaws-cpp-sdk-application-insights.so
libaws-cpp-sdk-appmesh.so
libaws-cpp-sdk-apprunner.so
libaws-cpp-sdk-appstream.so
libaws-cpp-sdk-appsync.so
libaws-cpp-sdk-athena.so
libaws-cpp-sdk-auditmanager.so
libaws-cpp-sdk-autoscaling-plans.so
libaws-cpp-sdk-autoscaling.so
libaws-cpp-sdk-AWSMigrationHub.so
libaws-cpp-sdk-awstransfer.so
libaws-cpp-sdk-backup-gateway.so
libaws-cpp-sdk-backup.so
libaws-cpp-sdk-backupstorage.so
libaws-cpp-sdk-batch.so
libaws-cpp-sdk-billingconductor.so
libaws-cpp-sdk-braket.so
libaws-cpp-sdk-budgets.so
libaws-cpp-sdk-ce.so
libaws-cpp-sdk-chime-sdk-identity.so
libaws-cpp-sdk-chime-sdk-media-pipelines.so
libaws-cpp-sdk-chime-sdk-meetings.so
libaws-cpp-sdk-chime-sdk-messaging.so
libaws-cpp-sdk-chime.so
libaws-cpp-sdk-cloud9.so
libaws-cpp-sdk-cloudcontrol.so
libaws-cpp-sdk-clouddirectory.so
libaws-cpp-sdk-cloudformation.so
libaws-cpp-sdk-cloudfront.so
libaws-cpp-sdk-cloudhsm.so
libaws-cpp-sdk-cloudhsmv2.so
libaws-cpp-sdk-cloudsearchdomain.so
libaws-cpp-sdk-cloudsearch.so
libaws-cpp-sdk-cloudtrail.so
libaws-cpp-sdk-codeartifact.so
libaws-cpp-sdk-codebuild.so
libaws-cpp-sdk-codecommit.so
libaws-cpp-sdk-codedeploy.so
libaws-cpp-sdk-codeguruprofiler.so
libaws-cpp-sdk-codeguru-reviewer.so
libaws-cpp-sdk-codepipeline.so
libaws-cpp-sdk-codestar-connections.so
libaws-cpp-sdk-codestar-notifications.so
libaws-cpp-sdk-codestar.so
libaws-cpp-sdk-cognito-identity.so
libaws-cpp-sdk-cognito-idp.so
libaws-cpp-sdk-cognito-sync.so
libaws-cpp-sdk-comprehendmedical.so
libaws-cpp-sdk-comprehend.so
libaws-cpp-sdk-compute-optimizer.so
libaws-cpp-sdk-config.so
libaws-cpp-sdk-connectcampaigns.so
libaws-cpp-sdk-connect-contact-lens.so
libaws-cpp-sdk-connectparticipant.so
libaws-cpp-sdk-connect.so
libaws-cpp-sdk-controltower.so
libaws-cpp-sdk-core.so
libaws-cpp-sdk-cur.so
libaws-cpp-sdk-customer-profiles.so
libaws-cpp-sdk-databrew.so
libaws-cpp-sdk-dataexchange.so
libaws-cpp-sdk-datapipeline.so
libaws-cpp-sdk-datasync.so
libaws-cpp-sdk-dax.so
libaws-cpp-sdk-detective.so
libaws-cpp-sdk-devicefarm.so
libaws-cpp-sdk-devops-guru.so
libaws-cpp-sdk-directconnect.so
libaws-cpp-sdk-discovery.so
libaws-cpp-sdk-dlm.so
libaws-cpp-sdk-dms.so
libaws-cpp-sdk-docdb.so
libaws-cpp-sdk-drs.so
libaws-cpp-sdk-ds.so
libaws-cpp-sdk-dynamodb.so
libaws-cpp-sdk-dynamodbstreams.so
libaws-cpp-sdk-ebs.so
libaws-cpp-sdk-ec2-instance-connect.so
libaws-cpp-sdk-ec2.so
libaws-cpp-sdk-ecr-public.so
libaws-cpp-sdk-ecr.so
libaws-cpp-sdk-ecs.so
libaws-cpp-sdk-eks.so
libaws-cpp-sdk-elasticache.so
libaws-cpp-sdk-elasticbeanstalk.so
libaws-cpp-sdk-elasticfilesystem.so
libaws-cpp-sdk-elastic-inference.so
libaws-cpp-sdk-elasticloadbalancing.so
libaws-cpp-sdk-elasticloadbalancingv2.so
libaws-cpp-sdk-elasticmapreduce.so
libaws-cpp-sdk-elastictranscoder.so
libaws-cpp-sdk-email.so
libaws-cpp-sdk-emr-containers.so
libaws-cpp-sdk-emr-serverless.so
libaws-cpp-sdk-es.so
libaws-cpp-sdk-eventbridge.so
libaws-cpp-sdk-events.so
libaws-cpp-sdk-evidently.so
libaws-cpp-sdk-finspace-data.so
libaws-cpp-sdk-finspace.so
libaws-cpp-sdk-firehose.so
libaws-cpp-sdk-fis.so
libaws-cpp-sdk-fms.so
libaws-cpp-sdk-forecastquery.so
libaws-cpp-sdk-forecast.so
libaws-cpp-sdk-frauddetector.so
libaws-cpp-sdk-fsx.so
libaws-cpp-sdk-gamelift.so
libaws-cpp-sdk-gamesparks.so
libaws-cpp-sdk-glacier.so
libaws-cpp-sdk-globalaccelerator.so
libaws-cpp-sdk-glue.so
libaws-cpp-sdk-grafana.so
libaws-cpp-sdk-greengrass.so
libaws-cpp-sdk-greengrassv2.so
libaws-cpp-sdk-groundstation.so
libaws-cpp-sdk-guardduty.so
libaws-cpp-sdk-healthlake.so
libaws-cpp-sdk-health.so
libaws-cpp-sdk-honeycode.so
libaws-cpp-sdk-iam.so
libaws-cpp-sdk-identity-management.so
libaws-cpp-sdk-identitystore.so
libaws-cpp-sdk-imagebuilder.so
libaws-cpp-sdk-importexport.so
libaws-cpp-sdk-inspector2.so
libaws-cpp-sdk-inspector.so
libaws-cpp-sdk-iot1click-devices.so
libaws-cpp-sdk-iot1click-projects.so
libaws-cpp-sdk-iotanalytics.so
libaws-cpp-sdk-iot-data.so
libaws-cpp-sdk-iotdeviceadvisor.so
libaws-cpp-sdk-iotevents-data.so
libaws-cpp-sdk-iotevents.so
libaws-cpp-sdk-iotfleethub.so
libaws-cpp-sdk-iot-jobs-data.so
libaws-cpp-sdk-iotsecuretunneling.so
libaws-cpp-sdk-iotsitewise.so
libaws-cpp-sdk-iot.so
libaws-cpp-sdk-iotthingsgraph.so
libaws-cpp-sdk-iottwinmaker.so
libaws-cpp-sdk-iotwireless.so
libaws-cpp-sdk-ivschat.so
libaws-cpp-sdk-ivs.so
libaws-cpp-sdk-kafkaconnect.so
libaws-cpp-sdk-kafka.so
libaws-cpp-sdk-kendra.so
libaws-cpp-sdk-keyspaces.so
libaws-cpp-sdk-kinesisanalytics.so
libaws-cpp-sdk-kinesisanalyticsv2.so
libaws-cpp-sdk-kinesis.so
libaws-cpp-sdk-kinesis-video-archived-media.so
libaws-cpp-sdk-kinesis-video-media.so
libaws-cpp-sdk-kinesis-video-signaling.so
libaws-cpp-sdk-kinesisvideo.so
libaws-cpp-sdk-kms.so
libaws-cpp-sdk-lakeformation.so
libaws-cpp-sdk-lambda.so
libaws-cpp-sdk-lex-models.so
libaws-cpp-sdk-lex.so
libaws-cpp-sdk-lexv2-models.so
libaws-cpp-sdk-lexv2-runtime.so
libaws-cpp-sdk-license-manager.so
libaws-cpp-sdk-license-manager-user-subscriptions.so
libaws-cpp-sdk-lightsail.so
libaws-cpp-sdk-location.so
libaws-cpp-sdk-logs.so
libaws-cpp-sdk-lookoutequipment.so
libaws-cpp-sdk-lookoutmetrics.so
libaws-cpp-sdk-lookoutvision.so
libaws-cpp-sdk-m2.so
libaws-cpp-sdk-machinelearning.so
libaws-cpp-sdk-macie2.so
libaws-cpp-sdk-macie.so
libaws-cpp-sdk-managedblockchain.so
libaws-cpp-sdk-marketplace-catalog.so
libaws-cpp-sdk-marketplacecommerceanalytics.so
libaws-cpp-sdk-marketplace-entitlement.so
libaws-cpp-sdk-mediaconnect.so
libaws-cpp-sdk-mediaconvert.so
libaws-cpp-sdk-medialive.so
libaws-cpp-sdk-mediapackage.so
libaws-cpp-sdk-mediapackage-vod.so
libaws-cpp-sdk-mediastore-data.so
libaws-cpp-sdk-mediastore.so
libaws-cpp-sdk-mediatailor.so
libaws-cpp-sdk-memorydb.so
libaws-cpp-sdk-meteringmarketplace.so
libaws-cpp-sdk-mgn.so
libaws-cpp-sdk-migrationhub-config.so
libaws-cpp-sdk-migration-hub-refactor-spaces.so
libaws-cpp-sdk-migrationhubstrategy.so
libaws-cpp-sdk-mobileanalytics.so
libaws-cpp-sdk-mobile.so
libaws-cpp-sdk-monitoring.so
libaws-cpp-sdk-mq.so
libaws-cpp-sdk-mturk-requester.so
libaws-cpp-sdk-mwaa.so
libaws-cpp-sdk-neptune.so
libaws-cpp-sdk-network-firewall.so
libaws-cpp-sdk-networkmanager.so
libaws-cpp-sdk-nimble.so
libaws-cpp-sdk-opensearch.so
libaws-cpp-sdk-opsworkscm.so
libaws-cpp-sdk-opsworks.so
libaws-cpp-sdk-organizations.so
libaws-cpp-sdk-outposts.so
libaws-cpp-sdk-panorama.so
libaws-cpp-sdk-personalize-events.so
libaws-cpp-sdk-personalize-runtime.so
libaws-cpp-sdk-personalize.so
libaws-cpp-sdk-pinpoint-email.so
libaws-cpp-sdk-pinpoint-sms-voice-v2.so
libaws-cpp-sdk-pinpoint.so
libaws-cpp-sdk-pi.so
libaws-cpp-sdk-polly.so
libaws-cpp-sdk-pricing.so
libaws-cpp-sdk-privatenetworks.so
libaws-cpp-sdk-proton.so
libaws-cpp-sdk-qldb-session.so
libaws-cpp-sdk-qldb.so
libaws-cpp-sdk-queues.so
libaws-cpp-sdk-quicksight.so
libaws-cpp-sdk-ram.so
libaws-cpp-sdk-rbin.so
libaws-cpp-sdk-rds-data.so
libaws-cpp-sdk-rds.so
libaws-cpp-sdk-redshift-data.so
libaws-cpp-sdk-redshift-serverless.so
libaws-cpp-sdk-redshift.so
libaws-cpp-sdk-rekognition.so
libaws-cpp-sdk-resiliencehub.so
libaws-cpp-sdk-resource-groups.so
libaws-cpp-sdk-resourcegroupstaggingapi.so
libaws-cpp-sdk-robomaker.so
libaws-cpp-sdk-rolesanywhere.so
libaws-cpp-sdk-route53domains.so
libaws-cpp-sdk-route53-recovery-cluster.so
libaws-cpp-sdk-route53-recovery-control-config.so
libaws-cpp-sdk-route53-recovery-readiness.so
libaws-cpp-sdk-route53resolver.so
libaws-cpp-sdk-route53.so
libaws-cpp-sdk-rum.so
libaws-cpp-sdk-s3control.so
libaws-cpp-sdk-s3-crt.so
libaws-cpp-sdk-s3-encryption.so
libaws-cpp-sdk-s3outposts.so
libaws-cpp-sdk-s3.so
libaws-cpp-sdk-sagemaker-a2i-runtime.so
libaws-cpp-sdk-sagemaker-edge.so
libaws-cpp-sdk-sagemaker-featurestore-runtime.so
libaws-cpp-sdk-sagemaker-runtime.so
libaws-cpp-sdk-sagemaker.so
libaws-cpp-sdk-savingsplans.so
libaws-cpp-sdk-schemas.so
libaws-cpp-sdk-sdb.so
libaws-cpp-sdk-secretsmanager.so
libaws-cpp-sdk-securityhub.so
libaws-cpp-sdk-serverlessrepo.so
libaws-cpp-sdk-servicecatalog-appregistry.so
libaws-cpp-sdk-servicecatalog.so
libaws-cpp-sdk-servicediscovery.so
libaws-cpp-sdk-service-quotas.so
libaws-cpp-sdk-sesv2.so
libaws-cpp-sdk-shield.so
libaws-cpp-sdk-signer.so
libaws-cpp-sdk-sms.so
libaws-cpp-sdk-sms-voice.so
libaws-cpp-sdk-snowball.so
libaws-cpp-sdk-snow-device-management.so
libaws-cpp-sdk-sns.so
libaws-cpp-sdk-sqs.so
libaws-cpp-sdk-ssm-contacts.so
libaws-cpp-sdk-ssm-incidents.so
libaws-cpp-sdk-ssm.so
libaws-cpp-sdk-sso-admin.so
libaws-cpp-sdk-sso-oidc.so
libaws-cpp-sdk-sso.so
libaws-cpp-sdk-states.so
libaws-cpp-sdk-storagegateway.so
libaws-cpp-sdk-sts.so
libaws-cpp-sdk-support-app.so
libaws-cpp-sdk-support.so
libaws-cpp-sdk-swf.so
libaws-cpp-sdk-synthetics.so
libaws-cpp-sdk-textract.so
libaws-cpp-sdk-text-to-speech.so
libaws-cpp-sdk-timestream-query.so
libaws-cpp-sdk-timestream-write.so
libaws-cpp-sdk-transcribe.so
libaws-cpp-sdk-transcribestreaming.so
libaws-cpp-sdk-transfer.so
libaws-cpp-sdk-translate.so
libaws-cpp-sdk-voice-id.so
libaws-cpp-sdk-waf-regional.so
libaws-cpp-sdk-waf.so
libaws-cpp-sdk-wafv2.so
libaws-cpp-sdk-wellarchitected.so
libaws-cpp-sdk-wisdom.so
libaws-cpp-sdk-workdocs.so
libaws-cpp-sdk-worklink.so
libaws-cpp-sdk-workmailmessageflow.so
libaws-cpp-sdk-workmail.so
libaws-cpp-sdk-workspaces.so
libaws-cpp-sdk-workspaces-web.so
libaws-cpp-sdk-xray.so
libaws-crt-cpp.a
libaws-c-s3.a
libaws-c-sdkutils.a
Kouhei Sutou / @kou: Oh, many libraries...
Could you try -laws-cpp-sdk-identity-management -laws-cpp-sdk-sts -laws-cpp-sdk-cognito-identity -laws-cpp-sdk-s3 -laws-cpp-sdk-core -laws-c-event-stream -laws-checksums -laws-c-common
?
It's based on https://github.com/apache/arrow/blob/master/cpp/cmake_modules/ThirdpartyToolchain.cmake#L4629-L4636 .
Nicola Crane / @thisisnic: Cheers @kou! That worked, so I'll submit a PR with that change.
[~wtacct77]
This should be updated by the next Arrow release, but in the short term as a workaround, you could edit the file configure
in the Arrow R package archive you're using on this line https://github.com/apache/arrow/blob/master/r/configure#L259 to have the additional flags that Kou has mentioned there.
Wayne Tu: Thank you Nicola and Kouhei so much! I will add the additional flags and try again to build Arrow R package with S3 enabled.
Kouhei Sutou / @kou: Issue resolved by pull request 14235 https://github.com/apache/arrow/pull/14235
still unresolved. arrow.so undefined symbol __libc_single_threaded R 4.2.2 gcc 13.2.0.5 Redhat Enterprise 7.9 running simple install.packages("arrow") using conda install works however - conda install r-arrow -c conda-forge
Hi,
I encountered "undefined symbol: _ZTIN3Aws4Auth22AWSCredentialsProviderE
Reporter: Wayne Tu Assignee: Nicola Crane / @thisisnic
PRs and other links:
Note: This issue was originally created as ARROW-17692. Please see the migration documentation for further details.