Closed njhhero closed 1 year ago
Thanks for sharing! When I attempt to run this command:
taxonkit create-taxdump -K 1 -P 3 -C 5 -O 7 -F 9 -G 11 -S 13 -T 15 \ --rank-names "realm","kingdom","phylum","class","order","family","genus","species" \ ictv.taxonomy.tsv --out-dir ictv-taxdump
It reminds me that -K is an unknown flag(also -P -C etc.). Is this problem related with taxonkit version? Looking forward to your reply, great thanks!
Yes, this is a problem with TaxonKit's version. Try version 0.11.1.
I recommend using geNomad for taxonomic assignment. I created this repo for testing purposes and I haven't benchmarked how good the assignment actually is.
apcamargo
commented
1 year ago
Thanks for sharing! When I attempt to run this command:
taxonkit create-taxdump -K 1 -P 3 -C 5 -O 7 -F 9 -G 11 -S 13 -T 15 \ --rank-names "realm","kingdom","phylum","class","order","family","genus","species" \ ictv.taxonomy.tsv --out-dir ictv-taxdump
It reminds me that -K is an unknown flag(also -P -C etc.). Is this problem related with taxonkit version? Looking forward to your reply, great thanks!