apeltzer / DeDup

A merged read deduplication tool capable to perform merged read deduplication on single end data.
GNU General Public License v3.0
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New implementation of DeDup #2

Closed sc13-bioinf closed 8 years ago

sc13-bioinf commented 8 years ago

This should do the right thing for F, R and M reads. M reads of the same or higher quality will be preferred over F and R reads.

(Where F indicates an R1 read, R indicates an R2 read and M indicates an artificial read created my merging and F and an R_ read)

Note: Should maybe use M_ reads only