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apeltzer / DeDup

A merged read deduplication tool capable to perform merged read deduplication on single end data.
GNU General Public License v3.0
9 stars 6 forks source link

Support CRAM input #8

Open apeltzer opened 5 years ago

apeltzer commented 5 years ago

It should be possible to read CRAM input (coming via htsjdk anyways), write CRAM directly AND provide an option to read a reference FastA file for that purpose.

x-ref: https://github.com/nf-core/eager/issues/181