search

apeltzer / ReportTable

The Report Generation Engine for the EAGER Pipeline
GNU General Public License v3.0
1 stars 1 forks source link

fix calculation for duplicates removed to use quality filtered reads #9

Closed sc13-bioinf closed 8 years ago

sc13-bioinf commented 8 years ago

Previously this would have been:

mapped reads prior RMDup 1069

mapped reads prior RMDup QF 712

of Duplicates removed 358

Mapped Reads after RMDup 711

It is now:

mapped reads prior RMDup 1069

mapped reads prior RMDup QF 712

of Duplicates removed 1

Mapped Reads after RMDup 711

apeltzer commented 8 years ago

What happens if we have no quality filtering applied ? Does that still work then ?

apeltzer commented 8 years ago

What happens if we have no quality filtering applied ? Does that still work then ?

sc13-bioinf commented 8 years ago

It should. What is the way to turn off QF in the GUI?

apeltzer commented 8 years ago

If you select zero as your filter its off ;-)

apeltzer commented 8 years ago

If you select zero as your filter its off ;-)