Smalt fails with compressed fasta files

apetkau / core-phylogenomics

Pipeline for identifying core SNPs and building a phylogenetic tree

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Smalt fails with compressed fasta files #22

Open csieffert opened 9 years ago

csieffert commented 9 years ago

Currently, the pipeline is failing without a clear error message when compressed fasta read files are used for input. These files must be gunzipped before running in the pipeline.