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apetkau / orthomcl-pipeline

Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
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failing tests with t/test.pipeline.pl #42

Closed ggoodstudydaydayup closed 4 years ago

ggoodstudydaydayup commented 4 years ago

Hi, When I want to test the pipeline, I met a problem. "Can't load '/data/liuyu/Software/miniconda3/envs/LTR_retriever/lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/List/Util/Util.so' for module List::Util: /data/liuyu/Software/miniconda3/envs/LTR_retriever/lib/site_perl/5.26.2/x86_64-linux-thread-multi/auto/List/Util/Util.so: undefined symbol: Perl_drand48_r at /data/liuyu/Software/miniconda3/envs/LTR_retriever/lib/site_perl/5.26.2/x86_64-linux-thread-multi/XSLoader.pm line 96." Could you please give me some advice? Thanks in advance. Liu

apetkau commented 4 years ago

Hello @ggoodstudydaydayup , did you install the Perl dependencies using conda or cpanm? If you used conda could you instead try using cpanm. It looks like there could be a mismatch between the complied C libraries for some of the Perl modules and the Perl version.

ggoodstudydaydayup commented 4 years ago

Thanks for your advice ! @apetkau