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apetkau / orthomcl-pipeline

Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
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error at Stage 10: Load Blast Results #43

Open ggoodstudydaydayup opened 4 years ago

ggoodstudydaydayup commented 4 years ago

Hi, When I run orthmcl-pipeline at Stage 10: Load Blast Results, it reported the error below. DBD::mysql::st execute failed: The table 'SimilarSequences' is full at /data/liuyu/Software/orthomcl/bin/orthomclLoadBlast line 39, line 12. Can you give me some advice? Thanks in advance.

apetkau commented 4 years ago

Hello @ggoodstudydaydayup, this sounds like an issue with your database. I would check to make sure that the disk has not filled up first of all. If it's not that, you may have to do some troubleshooting on database settings (you may also want to check how much data is in the 'SimilarSequences' table). Here is one page I found that might be useful https://stackoverflow.com/questions/730579/1114-hy000-the-table-is-full

ggoodstudydaydayup commented 4 years ago

Thanks for your advice. @apetkau