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aphp / UimaOnSpark

Way to run Uima Pipelines on Apache Spark
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Missing file? #5

Closed tomersagi closed 3 years ago

tomersagi commented 3 years ago

The instructions specify we should use a ref_doc_section.csv file. Where is this file ? How do we create it?

parisni commented 3 years ago

Try with this kind of csv. If it does not work, I will dig in the source code

first col: unique id of the section second: group id third: content of the section

"1","1","Current plan:"
"2","2","Blood products:"
"3","2","Total In:"
"4","2","Balance:"
"5","2","Allergies:"
"6","2","Last dose of Antibiotics:"
"7","2","IVF:"
"8","2","Stool:"
"9","2","Drains:"
"10","2","Total out:"
"11","2","PO:"
"12","2","NG:"
"13","2","TF:"
"14","2","Urine:"
"15","2","Infusions:"
"16","2","RR:"
"17","2","HR:"
"18","2","BP:"
"19","2","ABG:"
tomersagi commented 3 years ago

This works fine. Thanks.