aphp / edsnlp

Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
https://aphp.github.io/edsnlp/
BSD 3-Clause "New" or "Revised" License
113 stars 29 forks source link

feat: add UMLS terminology (#147) #165

Closed percevalw closed 1 year ago

percevalw commented 1 year ago

Description

Internalized #147 to pass the ci.

Checklist

codecov-commenter commented 1 year ago

Codecov Report

Base: 94.38% // Head: 94.43% // Increases project coverage by +0.05% :tada:

Coverage data is based on head (439a196) compared to base (f7ae323). Patch coverage: 98.50% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #165 +/- ## ========================================== + Coverage 94.38% 94.43% +0.05% ========================================== Files 166 168 +2 Lines 4840 4907 +67 ========================================== + Hits 4568 4634 +66 - Misses 272 273 +1 ``` | [Impacted Files](https://codecov.io/gh/aphp/edsnlp/pull/165?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp) | Coverage Δ | | |---|---|---| | [edsnlp/pipelines/ner/umls/patterns.py](https://codecov.io/gh/aphp/edsnlp/pull/165/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp#diff-ZWRzbmxwL3BpcGVsaW5lcy9uZXIvdW1scy9wYXR0ZXJucy5weQ==) | `98.07% <98.07%> (ø)` | | | [edsnlp/pipelines/core/terminology/terminology.py](https://codecov.io/gh/aphp/edsnlp/pull/165/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp#diff-ZWRzbmxwL3BpcGVsaW5lcy9jb3JlL3Rlcm1pbm9sb2d5L3Rlcm1pbm9sb2d5LnB5) | `98.03% <100.00%> (+0.21%)` | :arrow_up: | | [edsnlp/pipelines/factories.py](https://codecov.io/gh/aphp/edsnlp/pull/165/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp#diff-ZWRzbmxwL3BpcGVsaW5lcy9mYWN0b3JpZXMucHk=) | `100.00% <100.00%> (ø)` | | | [edsnlp/pipelines/ner/umls/factory.py](https://codecov.io/gh/aphp/edsnlp/pull/165/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp#diff-ZWRzbmxwL3BpcGVsaW5lcy9uZXIvdW1scy9mYWN0b3J5LnB5) | `100.00% <100.00%> (ø)` | | | [edsnlp/pipelines/ner/scores/tnm/tnm.py](https://codecov.io/gh/aphp/edsnlp/pull/165/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp#diff-ZWRzbmxwL3BpcGVsaW5lcy9uZXIvc2NvcmVzL3RubS90bm0ucHk=) | `93.47% <0.00%> (-2.18%)` | :arrow_down: | | [edsnlp/pipelines/misc/measurements/measurements.py](https://codecov.io/gh/aphp/edsnlp/pull/165/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp#diff-ZWRzbmxwL3BpcGVsaW5lcy9taXNjL21lYXN1cmVtZW50cy9tZWFzdXJlbWVudHMucHk=) | `95.54% <0.00%> (+0.34%)` | :arrow_up: | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aphp)

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