if isinstance(v, list):
- assert (
- len(v) == 2
- ), "`window` should be a tuple/list of two integer, or a single integer"
- v = tuple(v)
if isinstance(v, int):
if assigned is None:
- continue
if replace_entity:
143
2
0
98.60%
edsnlp/patch_spacy.py
Was already missing at lines 67-69
# if module is reloaded.
- existing_func = registry.factories.get(internal_name)
- if not util.is_same_func(factory_func, existing_func):
raise ValueError(
31
2
0
93.55%
edsnlp/optimization.py
Was already missing at line 32
def param_groups(self, value):
- self.optim.param_groups = value
Was already missing at line 36
def state(self):
- return self.optim.state
Was already missing at line 40
def state(self, value):
- self.optim.state = value
Was already missing at line 89
def __init__(self, groups):
- self.param_groups = groups
77
4
0
94.81%
edsnlp/matchers/simstring.py
Was already missing at line 280
if custom:
- attr = attr[1:].lower()
Was already missing at line 295
if custom:
- token_text = getattr(token._, attr)
else:
146
2
0
98.63%
edsnlp/language.py
Was already missing at line 103
if last != begin:
- logger.warning(
"Missed some characters during"
51
1
0
98.04%
edsnlp/data/standoff.py
Was already missing at line 43
def __init__(self, ann_file, line):
- super().__init__(f"File {ann_file}, unrecognized Brat line {line}")
Was already missing at line 83
if not len(ann_paths):
- return {
"text": text,
Was already missing at line 197
)
- except Exception:
raise Exception(
172
3
0
98.26%
edsnlp/data/polars.py
Was already missing at line 26
if hasattr(data, "collect"):
- data = data.collect()
assert isinstance(data, pl.DataFrame)
44
1
0
97.73%
edsnlp/data/json.py
Was already missing at line 94
if not is_jsonl:
- obj[FILENAME] = filename
results.append(obj)
Coverage Report
Files without new missing coverage
edsnlp/viz/quick_examples.py
Was already missing at lines 88-91
edsnlp/utils/span_getters.py
Was already missing at lines 51-54
Was already missing at lines 58-60 Was already missing at lines 61-63 Was already missing at line 65 Was already missing at lines 74-77 Was already missing at line 81 Was already missing at line 123 Was already missing at line 161edsnlp/utils/resources.py
Was already missing at line 33
edsnlp/utils/package.py
Was already missing at line 55
Was already missing at line 67 Was already missing at lines 86-90 Was already missing at line 412edsnlp/utils/numbers.py
Was already missing at line 34
Was already missing at lines 38-41edsnlp/utils/lazy_module.py
Was already missing at line 46
edsnlp/utils/filter.py
Was already missing at line 206
edsnlp/utils/bindings.py
Was already missing at line 22
edsnlp/train.py
Was already missing at line 190
Was already missing at lines 257-263 Was already missing at line 349 Was already missing at line 351 Was already missing at lines 385-387edsnlp/processing/spark.py
Was already missing at line 51
edsnlp/processing/simple.py
Was already missing at lines 28-30
edsnlp/processing/multiprocessing.py
Was already missing at lines 227-231
Was already missing at line 249 Was already missing at lines 252-259 Was already missing at line 452 Was already missing at lines 573-575 Was already missing at line 939 Was already missing at line 1007edsnlp/processing/deprecated_pipe.py
Was already missing at lines 162-164
Was already missing at lines 207-209edsnlp/pipes/trainable/span_linker/span_linker.py
Was already missing at lines 401-403
edsnlp/pipes/trainable/ner_crf/ner_crf.py
Was already missing at line 250
Was already missing at lines 258-260edsnlp/pipes/trainable/layers/crf.py
Was already missing at line 21
Was already missing at line 29 Was already missing at line 97 Was already missing at line 107 Was already missing at line 116edsnlp/pipes/trainable/embeddings/span_pooler/span_pooler.py
Was already missing at line 200
edsnlp/pipes/qualifiers/reported_speech/reported_speech.py
Was already missing at lines 18-22
edsnlp/pipes/qualifiers/negation/negation.py
Was already missing at line 22
edsnlp/pipes/qualifiers/hypothesis/hypothesis.py
Was already missing at line 21
edsnlp/pipes/qualifiers/history/history.py
Was already missing at lines 20-26
Was already missing at lines 310-316 Was already missing at lines 325-331 Was already missing at lines 397-400edsnlp/pipes/qualifiers/family/family.py
Was already missing at line 21
edsnlp/pipes/qualifiers/base.py
Was already missing at line 21
edsnlp/pipes/ner/tnm/tnm.py
Was already missing at lines 156-158
edsnlp/pipes/ner/tnm/model.py
Was already missing at line 139
Was already missing at line 163edsnlp/pipes/ner/scores/sofa/sofa.py
Was already missing at line 32
Was already missing at line 40edsnlp/pipes/ner/scores/elston_ellis/patterns.py
Was already missing at line 26
Was already missing at lines 32-36edsnlp/pipes/ner/scores/charlson/patterns.py
Was already missing at lines 21-23
edsnlp/pipes/ner/scores/base_score.py
Was already missing at line 154
edsnlp/pipes/ner/disorders/solid_tumor/solid_tumor.py
Was already missing at lines 114-117
Was already missing at lines 119-129 Was already missing at line 149edsnlp/pipes/ner/disorders/peripheral_vascular_disease/peripheral_vascular_disease.py
Was already missing at line 106
edsnlp/pipes/ner/disorders/diabetes/diabetes.py
Was already missing at line 133
Was already missing at line 136 Was already missing at line 148edsnlp/pipes/ner/disorders/connective_tissue_disease/connective_tissue_disease.py
Was already missing at line 102
edsnlp/pipes/ner/disorders/ckd/ckd.py
Was already missing at lines 119-122
edsnlp/pipes/ner/disorders/cerebrovascular_accident/cerebrovascular_accident.py
Was already missing at lines 110-112
edsnlp/pipes/ner/adicap/models.py
Was already missing at line 15
Was already missing at line 18edsnlp/pipes/misc/tables/tables.py
Was already missing at line 129
Was already missing at line 134edsnlp/pipes/misc/sections/sections.py
Was already missing at line 126
edsnlp/pipes/misc/measurements/measurements.py
Was already missing at lines 146-148
Was already missing at lines 159-162 Was already missing at line 165 Was already missing at line 194 Was already missing at line 233 Was already missing at line 244 Was already missing at line 258 Was already missing at line 498 Was already missing at line 711 Was already missing at lines 875-877 Was already missing at line 920 Was already missing at lines 927-929 Was already missing at lines 1034-1036edsnlp/pipes/misc/dates/models.py
Was already missing at line 152
Was already missing at lines 156-162 Was already missing at lines 170-172 Was already missing at line 188 Was already missing at line 204edsnlp/pipes/misc/dates/dates.py
Was already missing at line 243
Was already missing at line 245 Was already missing at line 247 Was already missing at lines 348-357 Was already missing at line 439 Was already missing at lines 450-452edsnlp/pipes/misc/consultation_dates/consultation_dates.py
Was already missing at line 131
Was already missing at line 134edsnlp/pipes/core/normalizer/__init__.py
Was already missing at line 7
edsnlp/pipes/core/endlines/endlines.py
Was already missing at lines 151-155
Was already missing at lines 158-160 Was already missing at line 191 Was already missing at line 278edsnlp/pipes/core/contextual_matcher/models.py
Was already missing at lines 19-23
edsnlp/pipes/core/contextual_matcher/contextual_matcher.py
Was already missing at line 94
Was already missing at line 343edsnlp/patch_spacy.py
Was already missing at lines 67-69
edsnlp/optimization.py
Was already missing at line 32
Was already missing at line 36 Was already missing at line 40 Was already missing at line 89edsnlp/matchers/simstring.py
Was already missing at line 280
Was already missing at line 295edsnlp/language.py
Was already missing at line 103
edsnlp/data/standoff.py
Was already missing at line 43
Was already missing at line 83 Was already missing at line 197edsnlp/data/polars.py
Was already missing at line 26
edsnlp/data/json.py
Was already missing at line 94
Was already missing at line 96edsnlp/data/converters.py
Was already missing at line 659
edsnlp/data/base.py
Was already missing at lines 174-180
edsnlp/core/torch_component.py
Was already missing at line 390
Was already missing at line 436edsnlp/core/registries.py
Was already missing at line 75
edsnlp/core/pipeline.py
Was already missing at line 550
edsnlp/core/lazy_collection.py
Was already missing at line 51
Was already missing at line 436edsnlp/connectors/omop.py
Was already missing at line 69
Was already missing at line 87 Was already missing at line 127 Was already missing at line 171257 files skipped due to complete coverage.
Coverage success: total of 97.58% is above 97.58% 🎉