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appliedbinf / el_gato

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Lines repeated in the MLST report #4

Closed tbazilegith closed 1 year ago

tbazilegith commented 1 year ago

Hi Alan, Why I am getting two lines for one sample in the file possible_mlsts.txt?

Sample ST flaA pilE asd mip mompS proA neuA_neuAH JAX19001326_assembly Novel ST 30 60 43 61 15 29 233 JAX19001326_assembly Novel ST 30 60 43 61 15 29 233

Is that meaningful? Thanks! TJ

Alan-Collins commented 1 year ago

Please see the readme for details of what is included in output files. Two lines in that file means that for at least one locus, two alleles were identified. You can look at the identified_alleles.fna file to see the sequences of all identified alleles.

The issues section of GitHub it intended to be a place where people can report bugs or problems with code. Please do not open issues that can be answered by reading the documentation.

tbazilegith commented 1 year ago

?