Closed apriha closed 4 years ago
Merging #87 into develop will increase coverage by
1.75%
. The diff coverage is100.00%
.
@@ Coverage Diff @@
## develop #87 +/- ##
===========================================
+ Coverage 91.66% 93.41% +1.75%
===========================================
Files 9 9
Lines 1319 1336 +17
Branches 247 249 +2
===========================================
+ Hits 1209 1248 +39
+ Misses 68 46 -22
Partials 42 42
Impacted Files | Coverage Δ | |
---|---|---|
src/snps/snps.py | 93.38% <100.00%> (+1.74%) |
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src/snps/snps_collection.py | 95.76% <100.00%> (+0.03%) |
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src/snps/resources.py | 94.73% <0.00%> (+0.40%) |
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src/snps/ensembl.py | 70.73% <0.00%> (+39.02%) |
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This PR adds the following:
deduplicate_MT_chrom
parameter toSNPs
to deduplicate MT allelesheterozygous_MT_snps
property to identify heterozygous MT SNPs found during deduplicationhomozygous_snps
helper function