ModuleNotFoundError: No module named 'attn_core_inplace_cuda'

[SimonKitSangChu]

No module named attn_core_inplace_cuda was found during inference on A100. Preinstalled CUDA 11.6 outside of conda.

Traceback (most recent call last):
  File "run_pretrained_openfold.py", line 21, in <module>
    from openfold.utils.script_utils import load_models_from_command_line, parse_fasta, run_model, prep_output, \
  File "/scratch/user/openfold/openfold/utils/script_utils.py", line 10, in <module>
    from openfold.model.model import AlphaFold
  File "/scratch/user/openfold/openfold/model/model.py", line 21, in <module>
    from openfold.model.embedders import (
  File "/scratch/user/openfold/openfold/model/embedders.py", line 20, in <module>
    from openfold.model.primitives import Linear, LayerNorm
  File "/scratch/user/openfold/openfold/model/primitives.py", line 37, in <module>
    from openfold.utils.kernel.attention_core import attention_core
  File "/scratch/user/openfold/openfold/utils/kernel/attention_core.py", line 20, in <module>
    attn_core_inplace_cuda = importlib.import_module("attn_core_inplace_cuda")
  File "/scratch/user/openfold/lib/conda/envs/openfold_venv/lib/python3.7/importlib/__init__.py", line 127, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
ModuleNotFoundError: No module named 'attn_core_inplace_cuda'

lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 20.04 LTS
Release:        20.04
Codename:       focal

[gahdritz]

Did you run python3 setup.py install when you installed OpenFold?

[Kongjh]

Have u fix this issue？ I got the same error

[pengtb]

Run scripts/install_third_party_dependencies.sh to configure kernels and folding resources.

exec the script then everthing is ok

[Tom0515Lt]

I got the same question.How to deal?

[Huangq0825]

Run scripts/install_third_party_dependencies.sh to configure kernels and folding resources.

exec the script then everthing is ok

this way is okay, thanks!