Hi, thank you very much for your work. Now I want to training openfold, and download the corresponding dataset(RODA dataset), and then use the following script for training.
python3 train_openfold.py /oss/pdb_mmcif/mmcif_files/ /oss/flatten_data/alignments/ /oss/pdb_mmcif/mmcif_files/ 23_2_25_output_dir/ 2021-10-10 \ --template_release_dates_cache_path mmcif_cache.json \ --precision bf16 \ --gpus 8 \ --replace_sampler_ddp=True \ --seed 42 \ --deepspeed_config_path deepspeed_config.json \ --checkpoint_every_epoch \ --resume_model_weights_only True \ --train_chain_data_cache_path chain_data_cache.json \ --obsolete_pdbs_file_path /oss/pdb_mmcif/obsolete.dat
I did not modify the code of openfold. And The dataset used you provided in the RODA, but did not use the self-distillation dataset (in the paper, this step does not seem to have a great impact on the accuracy). I conducted 8 gpus training. But I find that the "lddtca" is unable to improve. I want to ask what is the possible reason.
Hi, thank you very much for your work. Now I want to training openfold, and download the corresponding dataset(RODA dataset), and then use the following script for training.![image](https://user-images.githubusercontent.com/33170085/221426527-ba652a91-4637-4e95-8f13-dfd385afa6b4.png)
python3 train_openfold.py /oss/pdb_mmcif/mmcif_files/ /oss/flatten_data/alignments/ /oss/pdb_mmcif/mmcif_files/ 23_2_25_output_dir/ 2021-10-10 \ --template_release_dates_cache_path mmcif_cache.json \ --precision bf16 \ --gpus 8 \ --replace_sampler_ddp=True \ --seed 42 \ --deepspeed_config_path deepspeed_config.json \ --checkpoint_every_epoch \ --resume_model_weights_only True \ --train_chain_data_cache_path chain_data_cache.json \ --obsolete_pdbs_file_path /oss/pdb_mmcif/obsolete.dat
I did not modify the code of openfold. And The dataset used you provided in the RODA, but did not use the self-distillation dataset (in the paper, this step does not seem to have a great impact on the accuracy). I conducted 8 gpus training. But I find that the "lddtca" is unable to improve. I want to ask what is the possible reason.