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aquariumbio / pfish

Scripts for pulling/pushing protocols/libraries to/from Aquarium.
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pull doesn't automatically include libraries #46

Closed dvnstrcklnd closed 3 years ago

dvnstrcklnd commented 3 years ago

When doing pfish pull -c 'My Category' it pulls sample types, object types, and operation types, but not libraries. Version info:

Devins-MBP:yeast-display devin$ pfish update
Updating pfish v.1.0.0 (see: https://github.com/aquariumbio/pfish#updating)
1.0.0: Pulling from aquariumbio/pfish
Digest: sha256:c253f7212672701fb5bb526529c2f969a16fc80eac88315ea0835803e81208cd
Status: Image is up to date for aquariumbio/pfish:1.0.0
docker.io/aquariumbio/pfish:1.0.0
dvnstrcklnd commented 3 years ago

I'm admittedly unsure if this is actually not working. It seems like it must have worked in the past or I would have realized it, but maybe I missed it?

dvnstrcklnd commented 3 years ago

In case it's not clear, if I do something like pfish pull -c 'My Category', it's really important to me that it actually pull everything in the category or fail loudly.

dvnstrcklnd commented 3 years ago

This appears to be working now.