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aquaskyline / SOAPdenovo2

Next generation sequencing reads de novo assembler.
GNU General Public License v3.0
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version `GLIBCXX_3.4.20' not found #22

Closed aersoares81 closed 7 years ago

aersoares81 commented 7 years ago

Hi, apparently the binaries compiled with no error, but I'm getting these erros I've never seen with previous versions:

/home/user/bin/SOAPdenovo-63mer: /usr/local/gcc-4.8.1/lib64/libstdc++.so.6: version `GLIBCXX_3.4.20' not found (required by /home/user/bin/SOAPdenovo-63mer)
/home/user/bin/SOAPdenovo-63mer: /usr/local/gcc-4.8.1/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /home/user/bin/SOAPdenovo-63mer)
/home/user/bin/SOAPdenovo-63mer: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by /home/user/bin/SOAPdenovo-63mer)
aquaskyline commented 7 years ago

This is because the libraries of the gcc version 4.8.1 you were using where not reachable by the paths you've defined in an environment variable $LD_LIBRARY_PATH. I suggest you to use bioconda to install SOAPdenovo.