In an effort to harmonize the options of the command lines available in clinica, the option --subjects-lists (-sl) for the converter adni-to-bids should be progressively replaced by the option -tsv which is commonly used in pipelines. The modifications should :
add -tsv option for converters
detect format (.txt or .tsv) :
if .txt : indicate coming-up deprecation of the -sl option and ask the user to change format + add column name ; still take that format for now
if .tsv : take the format
add unit test if not present
indicate change in docs + give example with right format
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In an effort to harmonize the options of the command lines available in clinica, the option --subjects-lists (-sl) for the converter adni-to-bids should be progressively replaced by the option -tsv which is commonly used in pipelines. The modifications should :