Problems when performing t1-volume processing

aramis-lab / clinica

Software platform for clinical neuroimaging studies

http://www.clinica.run/

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Problems when performing t1-volume processing #1360

Open fyb99 opened 3 weeks ago

fyb99 commented 3 weeks ago

Pipeline Which Clinica's Pipeline is concerned?

t1-volume ...

Converters Which Clinica's converter is concerned?

adni-to-bids

Hi, I am using the t1-volume processing pipeline now. I have configured the required softwares. However, when I test the pipeline with only one BIDS sample, the program seems stucking with no progress or print any logs. What is wrong with that?

When I force pause, my terminal has problems, specifically it does not display my input and does not wrap.

AliceJoubert commented 3 weeks ago

Hello,

Did you try more than once ? What is your setup (OS, virtual machine..) ?

fyb99 commented 3 weeks ago

I use it on a server with the system of ubuntu 22.04. I only try it once, because when I try it, my terminal get stucking.

AliceJoubert commented 2 weeks ago

Hello @fyb99,

Apologies for the late response. In case you still have that issue, you can try the following :

Launch the same command with a working directory (documentation here) in one terminal
Use another terminal to watch what is happening in this directory. Normally, the intermediary results of the pipelines are stored in it and are moved at the end of the process in the CAPS. This way, you can pin point what step is blocking.

Do not hesitate to report back or ask for help if needed.

Best,