Issue With Installation for ANTS

aramis-lab / clinicadl

Framework for the reproducible processing of neuroimaging data with deep learning methods

https://clinicadl.readthedocs.io/

MIT License

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Issue With Installation for ANTS #452

Open J-V1 opened 1 year ago

J-V1 commented 1 year ago

Hi, I am still new to clinicaDL and was having an issue while following the installation steps for windows. It states that ANTS path variable is not set. I have ANTS installed on the linux subsystem, but was confused on the issue as I thought I had installed it correctly. Any help would be greatly appreciated!

ANTSpath variable is not set

I have tried the "which antsRegistration" and "antsRegistrationSyN.sh" commands and they are working as intended, Im just not sure how to access ANTS from where I am running the clincia env in windows?

ghisvail commented 1 year ago

@J-V1 The issue seems to be with your execution environment rather than Clinica or ClincaDL specifically.

I have ANTS installed on the linux subsystem

How did you install ANTs on WSL?

ANTSPATH variable is not set.

It seems like the ANTSPATH envvar is not set. It should point to where the ANTS binaries are installed.

Please consider setting it manually, or via your shell init scripts.