arayabrain / barebone-studio

pipeline tool
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Freeze on suite2p_registration with docs/installation/docker_for_developer.md #365

Open milesAraya opened 1 week ago

milesAraya commented 1 week ago

追加機能についての概要 When installing docker_for_developer using the branch feature/update-multiuser-settings, and trying to reproduce tutorial1, if I RUN, I get an error at suite2p_registration.

It seems caiman_mc is working

2024-06-25 18:00:40,806 : ERROR - smk_status_logger.py - {'level': 'debug', 'msg': 'Full Traceback (most recent call last):\n File "/usr/local/lib/python3.8/site-packages/snakemake/executors/init.py", line 2561, in run_wrapper\n run(\n File "/app/studio/app/Snakefile", line 101, in __rule_4\n File "/usr/local/lib/python3.8/site-packages/snakemake/script.py", line 1567, in script\n executor.evaluate()\n File "/usr/local/lib/python3.8/site-packages/snakemake/script.py", line 455, in evaluate\n self.execute_script(fd.name, edit=edit)\n File "/usr/local/lib/python3.8/site-packages/snakemake/script.py", line 683, in execute_script\n self._execute_cmd(\n File "/usr/local/lib/python3.8/site-packages/snakemake/script.py", line 486, in _executecmd\n return shell(\n File "/usr/local/lib/python3.8/site-packages/snakemake/shell.py", line 294, in new\n raise sp.CalledProcessError(retcode, cmd)\nsubprocess.CalledProcessError: Command \'source /opt/miniconda3/bin/activate \'/app/.snakemake/conda/0f05ef6e0614bb486f644bea8d4b33d4\'; set -euo pipefail; python /app/.snakemake/scripts/tmp8_ru4hde.func.py\' died with <Signals.SIGSEGV: 11>.\n', 'timestamp': 1719306040.8063872}

重要度 中: この機能は開発要件に含まれているが、早急に対応する必要はない。

ブランチ名 feature/update-multiuser-settings

ライブラリ 使用する・使用できそうなライブラリなど。

その他 Mac M3 chip, Sonoma 14.5 (23F79)

studio.log from 2nd occurance

Terminal log from 1st occurance