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arendma
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GRN_web
This repository contains the source code for the R Shiny server application allowing to query the gene regulatory network presented in https://www.nature.com/articles/s41467-023-38183-4
http://grn-web.bio.uni-potsdam.de/
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Fix/docker restart always
#53
arne-cl
closed
1 year ago
0
fix filename generation in coregsFname
#52
arne-cl
closed
1 year ago
1
regulator download not working
#51
arendma
closed
1 year ago
2
Added test paragraph with infos on publication and support
#50
arendma
closed
1 year ago
0
show which version is currently deployed
#49
arne-cl
opened
1 year ago
0
get SSL certificate to make https://grn-web... work
#48
arne-cl
opened
1 year ago
0
Release 1.0.0
#47
arendma
closed
1 year ago
0
Added Usage guide with pictures
#46
arendma
closed
1 year ago
0
Fix/percent edges regards #43
#45
arendma
closed
1 year ago
0
Fix/percent edges regards #43
#44
arendma
closed
1 year ago
0
Absolute No of edges not % is returned
#43
arendma
opened
1 year ago
1
fix: strip gene id strings, close #40
#42
arne-cl
closed
1 year ago
0
Refac/cleanup
#41
arendma
closed
1 year ago
3
remove spaces around gene IDs when entering manually
#40
arne-cl
closed
1 year ago
1
multiple tabs: targets, coregulators, close issue #34
#39
arne-cl
closed
1 year ago
0
gene IDs upload or manual entry for top coreg calculation
#38
arne-cl
closed
1 year ago
0
fix go plot alignment, close #29
#37
arne-cl
closed
1 year ago
0
fix go plot alignment, closes #29
#36
arne-cl
closed
1 year ago
0
Single gene web-input for coregulator info
#35
arendma
closed
1 year ago
2
Visually seperate target from regulator info
#34
arendma
closed
1 year ago
2
show spinning wheel while waiting, closes #30
#33
arne-cl
closed
1 year ago
0
replace goplot+heatmap with combined plot, fixes #29
#32
arne-cl
closed
1 year ago
0
Improved label of plot
#31
arendma
closed
1 year ago
0
Server appears irresponsive
#30
arendma
closed
1 year ago
1
Webapp does not show correct go-plot
#29
arendma
closed
1 year ago
2
Fixed error in labelling and selection of GO terms in plot
#28
arendma
closed
1 year ago
0
merge current develop branch into main
#27
arne-cl
closed
1 year ago
0
update README for web app
#26
arne-cl
closed
1 year ago
0
Enh/upload gene ids
#25
arne-cl
closed
2 years ago
0
error in evaluating the argument 'X' in selecting a method for function 'sapply': non-character argument
#24
arne-cl
opened
2 years ago
2
add GO term enrichment plots to shiny app
#23
arne-cl
closed
2 years ago
0
Enh/rel topx
#22
arendma
closed
2 years ago
0
shiny: add phot coregulators
#21
arne-cl
closed
2 years ago
0
shiny app: add coregulators to output
#20
arne-cl
closed
2 years ago
0
enable manual heroku deployment
#19
arne-cl
closed
2 years ago
0
enable downloading tables as xlsx files, closes #12
#18
arne-cl
closed
2 years ago
0
don't compile, install BioConductor binary packages instead
#17
arne-cl
closed
2 years ago
0
BioConductor packages not available
#16
arendma
closed
2 years ago
4
Enh/g oana
#15
arendma
closed
2 years ago
0
Enh/g oana
#14
arendma
closed
2 years ago
0
close #10 shiny: show numbers in scientific format
#13
arne-cl
closed
2 years ago
0
shiny: add download option for tables (CSV, xlsx)
#12
arne-cl
closed
2 years ago
0
updated R version requirement
#11
arendma
closed
2 years ago
0
shiny: format numbers like in base R
#10
arne-cl
closed
2 years ago
1
target name column gives Index instead of character
#8
arendma
closed
2 years ago
3
add minimal shiny app
#7
arne-cl
closed
2 years ago
0
Fix/invalid factor level
#6
arne-cl
closed
2 years ago
0
Github Actions: run test.r on every push
#5
arne-cl
closed
2 years ago
1
error in regTFls(): arguments imply differing number of rows
#4
arne-cl
closed
2 years ago
1
regtarget() warns: invalid factor level, NA generated
#3
arne-cl
closed
2 years ago
5
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