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arendsee / fagin

Classify genes using a syntenic filter
GNU General Public License v3.0
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New updates? #2

Closed urmi-21 closed 7 years ago

urmi-21 commented 7 years ago

Hi Zeb, just wanted to know hows the synder paper and project is going? Are you also working on fagin? We need to get it working.

arendsee commented 7 years ago

Hey Urminder, nice to hear from you. I've been having a hard time getting into contact with everyone (I missed your issue post until just now). I can't use anything Google-based and Slack is also, unfortunately, blocked. So my main route of contact is through github.

You should look over the coding-group repository. I would like to start a little scripting group within the bioinformatics side of our lab. That will also be a nice venue for staying in touch in general.

Communicating through Fagin issues is also pretty good (especially since it is a private repository).

Anyway, I am working on the Synder paper. Are you on overleaf? I will push all my updates there. I am working currently on writing about related work (thanks for the file on synteny programs, by the way).

I will also be working on my rewrite of Fagin. This will take awhile to do well (I can't easily make an estimate yet). Getting Synder published is a first priority.