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areyesq89 / DEXSeq

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DEXSeq python scripts output #5

Closed OlgaVT closed 4 years ago

OlgaVT commented 4 years ago

Hi,

I used a dexseq_prepare_annotation.py and dexseq_count.py scripts on the human gtf annotation and RNA-Seq alignments. Some lines look like: ENSG00000288258+ENSG00000182712+ENSG00000214827:001

Maybe I overlooked in the manual, what these "+" mean. Could you help me? Thank you!

areyesq89 commented 4 years ago

Hi @OlgaVT. Please have a look at the script's help, there is a parameter that specifies the behaviour when two genes share one exon. One option is to merge these gene identifiers with a "+" separator, another option is to leave the genes unmerged and ignore the common exon.