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argiroff
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Argiroff_stresstol_2024
Project to identify stress tolerant microbial communities associated with Populus
MIT License
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Finish ANCOMBC volcano plots and summary
#31
argiroff
closed
8 months ago
0
Summarize ANCOMBC results
#30
argiroff
closed
8 months ago
0
Code for running SPIEC-EASI
#29
argiroff
closed
8 months ago
0
Automate generation of SPIEC-EASI input files
#28
argiroff
closed
9 months ago
0
Format ITS sequence metadata
#27
argiroff
closed
9 months ago
1
Run 16S ANCOMBC2
#26
argiroff
closed
9 months ago
0
Generate ANCOMBC2 input, 16S
#25
argiroff
closed
9 months ago
0
Generate 16S OTU, metadata, tax, and representative sequence files
#24
argiroff
closed
9 months ago
1
Automate ITS QIIME2 pipeline
#23
argiroff
closed
9 months ago
0
Automate 16S taxonomic assignment
#22
argiroff
closed
9 months ago
0
Automate DADA2 summary and OTU clustering
#21
argiroff
closed
9 months ago
0
ITSxpress bash script
#20
argiroff
closed
9 months ago
0
Automate ITSxpress and summary of trimmed sequences for ITS
#19
argiroff
closed
9 months ago
0
Automate summary of trimmed sequences and DADA2
#18
argiroff
closed
9 months ago
0
Automate primer/adapter removal from 16S sequences with cutadapt
#17
argiroff
closed
9 months ago
0
Create summary visualizations of demux QZAs
#16
argiroff
closed
9 months ago
0
Automate QIIME2 import with make
#15
argiroff
closed
9 months ago
0
Automate QIIME2 import
#14
argiroff
closed
9 months ago
0
Test filename parsing
#13
argiroff
closed
8 months ago
0
Create Makefile
#12
argiroff
closed
9 months ago
0
Cluster OTUs from ASVs
#11
argiroff
closed
9 months ago
0
Add QIIME2 scripts
#10
argiroff
closed
9 months ago
0
Convert project directory to an R project
#9
argiroff
closed
9 months ago
0
Create bash script to install mothur
#8
argiroff
closed
9 months ago
0
Convert instructions from README files into bash scripts
#7
argiroff
closed
9 months ago
0
Format README files with markdown
#6
argiroff
closed
9 months ago
0
Download reference using command line tools
#5
argiroff
closed
9 months ago
0
References
#4
argiroff
opened
9 months ago
0
Align OTU reference sequences to SILVA SEED file
#3
argiroff
opened
9 months ago
1
Install mothur
#2
argiroff
closed
9 months ago
0
Get SILVA reference files
#1
argiroff
closed
9 months ago
0