Happy New Year to everyone! We are aware of a couple of issues, which are due to some recent updates in some of the axillary dependencies. See below for more details. Happy segmenting!
1) Runtime error
As you can see below on the screenshot, when installing Cellpose a runtime error occurs. Just click "restart runtime" and then confirm in the pop window, will resolve the issue.
2) ImportError ‘_registerMatType’
A newer version of open cv got installed, which was incompatible.
Just running the command line below right before "!pip install Cellpose" will resolve the issue!
!pip install "opencv-python-headless<4.3" --copy/paste into your notebook. Feel free to contact me and I can also send you an updated Colab file (dkopinke at ufl dot edu).
3) Value Error
After running the "import numpy" box, we do notice a value error (see below). However, this does not affect segmentation.
Happy New Year to everyone! We are aware of a couple of issues, which are due to some recent updates in some of the axillary dependencies. See below for more details. Happy segmenting!
1) Runtime error As you can see below on the screenshot, when installing Cellpose a runtime error occurs. Just click "restart runtime" and then confirm in the pop window, will resolve the issue.
2) ImportError ‘_registerMatType’ A newer version of open cv got installed, which was incompatible.
Just running the command line below right before "!pip install Cellpose" will resolve the issue!
!pip install "opencv-python-headless<4.3" --copy/paste into your notebook. Feel free to contact me and I can also send you an updated Colab file (dkopinke at ufl dot edu).
3) Value Error After running the "import numpy" box, we do notice a value error (see below). However, this does not affect segmentation.