ci: Adjust coverage run options for sonarcloud

[gmuloc]

Description

Currently sonar cannot work with our coverage config

Checklist:

• [x] My code follows the style guidelines of this project
• [x] I have performed a self-review of my code
• [x] I have run pre-commit for code linting and typing (pre-commit run)
• [x] I have made corresponding changes to the documentation
• [x] I have added tests that prove my fix is effective or that my feature works
• [x] New and existing unit tests pass locally with my changes (tox -e testenv)