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aristoteleo / dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses
https://dynamo-release.readthedocs.io/en/latest/
BSD 3-Clause "New" or "Revised" License
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"cell" parameter for In silico perturbation #393

Closed Mnew1288 closed 1 year ago

Mnew1288 commented 2 years ago

Hi Xiaojie,

Could you show me how to set the "cell" parameter so I can do In silico perturbation in selected cell populations (for example, cluster1)?

Thanks!

Xiaojieqiu commented 2 years ago

thanks for the question, the j_delta_x_perturbation key from the resultant adata object include perturbation effect for all cells. you can manually for now set the values for cells not belong to cluster1 to be 0. Meanwhile, we will add a new argument for this later

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